View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16680_high_3 (Length: 221)

Name: NF16680_high_3
Description: NF16680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16680_high_3
NF16680_high_3
[»] chr1 (11 HSPs)
chr1 (1-183)||(4256525-4256707)
chr1 (175-221)||(2951358-2951404)
chr1 (180-221)||(38913744-38913785)
chr1 (181-221)||(4266572-4266612)
chr1 (181-221)||(29942209-29942249)
chr1 (182-221)||(1231987-1232026)
chr1 (178-221)||(31018195-31018238)
chr1 (183-221)||(9216222-9216260)
chr1 (183-221)||(18855233-18855271)
chr1 (183-221)||(34888686-34888724)
chr1 (185-221)||(50326192-50326228)
[»] chr4 (14 HSPs)
chr4 (183-221)||(39058357-39058395)
chr4 (183-221)||(16917888-16917926)
chr4 (181-221)||(12090457-12090497)
chr4 (181-221)||(33139469-33139509)
chr4 (182-221)||(30824921-30824960)
chr4 (182-221)||(37651857-37651896)
chr4 (183-221)||(16904952-16904990)
chr4 (183-221)||(18209702-18209740)
chr4 (183-221)||(31965969-31966007)
chr4 (183-221)||(35760772-35760810)
chr4 (183-221)||(37590804-37590842)
chr4 (183-221)||(52434815-52434853)
chr4 (183-221)||(53143262-53143300)
chr4 (185-221)||(46256225-46256261)
[»] chr6 (12 HSPs)
chr6 (182-221)||(13533958-13533997)
chr6 (183-221)||(1405563-1405601)
chr6 (181-221)||(8539744-8539784)
chr6 (182-221)||(28099596-28099635)
chr6 (182-221)||(33646133-33646172)
chr6 (183-221)||(162669-162707)
chr6 (183-221)||(2266967-2267005)
chr6 (183-221)||(3593084-3593122)
chr6 (183-221)||(12597265-12597303)
chr6 (183-221)||(14671902-14671940)
chr6 (181-221)||(15044913-15044953)
chr6 (185-221)||(19997856-19997892)
[»] scaffold0515 (1 HSPs)
scaffold0515 (183-221)||(6061-6099)
[»] scaffold0306 (1 HSPs)
scaffold0306 (183-221)||(6071-6109)
[»] chr8 (11 HSPs)
chr8 (183-221)||(28583046-28583084)
chr8 (181-221)||(15961323-15961363)
chr8 (181-221)||(23353620-23353660)
chr8 (182-221)||(6299019-6299058)
chr8 (183-221)||(995815-995853)
chr8 (183-221)||(10478128-10478166)
chr8 (183-221)||(18175572-18175610)
chr8 (183-221)||(30473884-30473922)
chr8 (183-221)||(32110861-32110899)
chr8 (183-221)||(39997882-39997920)
chr8 (183-220)||(42308123-42308160)
[»] chr5 (12 HSPs)
chr5 (179-221)||(34110843-34110885)
chr5 (181-221)||(20655047-20655087)
chr5 (181-221)||(20874879-20874919)
chr5 (181-221)||(40177232-40177272)
chr5 (183-221)||(1396180-1396218)
chr5 (183-221)||(2398942-2398980)
chr5 (183-221)||(10729442-10729480)
chr5 (183-221)||(16526306-16526344)
chr5 (182-220)||(17373160-17373198)
chr5 (183-221)||(34107338-34107376)
chr5 (183-221)||(38246865-38246903)
chr5 (181-221)||(33375955-33375995)
[»] chr7 (14 HSPs)
chr7 (181-221)||(13786361-13786401)
chr7 (182-221)||(21342014-21342053)
chr7 (182-221)||(38163338-38163377)
chr7 (183-221)||(16376545-16376583)
chr7 (183-221)||(21804572-21804610)
chr7 (183-221)||(31373647-31373685)
chr7 (183-221)||(33916947-33916985)
chr7 (183-221)||(40969082-40969120)
chr7 (183-221)||(42242154-42242192)
chr7 (183-220)||(27903417-27903454)
chr7 (63-104)||(47528038-47528079)
chr7 (181-221)||(17178235-17178275)
chr7 (181-221)||(21670172-21670212)
chr7 (181-221)||(27138526-27138566)
[»] chr3 (14 HSPs)
chr3 (181-221)||(26948989-26949029)
chr3 (182-221)||(3898613-3898652)
chr3 (182-221)||(21098495-21098534)
chr3 (182-221)||(34121546-34121585)
chr3 (182-221)||(40014652-40014691)
chr3 (182-221)||(49672753-49672792)
chr3 (183-221)||(1941720-1941758)
chr3 (183-221)||(4584434-4584472)
chr3 (183-221)||(6460168-6460206)
chr3 (183-221)||(12264391-12264429)
chr3 (183-221)||(36076454-36076492)
chr3 (183-221)||(38653927-38653965)
chr3 (183-221)||(43363611-43363649)
chr3 (183-220)||(54073222-54073259)
[»] chr2 (11 HSPs)
chr2 (181-221)||(41664701-41664741)
chr2 (182-221)||(44902272-44902311)
chr2 (183-221)||(6120743-6120781)
chr2 (183-221)||(8700452-8700490)
chr2 (183-221)||(18351742-18351780)
chr2 (183-221)||(19596363-19596401)
chr2 (183-221)||(20545016-20545054)
chr2 (183-221)||(27944796-27944834)
chr2 (181-221)||(25889037-25889077)
chr2 (181-221)||(41663428-41663468)
chr2 (181-221)||(42442155-42442195)
[»] scaffold0031 (1 HSPs)
scaffold0031 (183-221)||(46465-46503)
[»] scaffold0022 (1 HSPs)
scaffold0022 (182-220)||(149049-149087)


Alignment Details
Target: chr1 (Bit Score: 154; Significance: 7e-82; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 4256707 - 4256525
Alignment:
Q  1 ttaattcatcaacgatgattgatgaatatagttctatatnnnnnnntttattcatattttctttaattataaaagtaggttatacataaacacttgtata 100  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4256707 ttaattcatcaacgatgattgatgaatatagttctatataaaattttttattcatattgtctttaattataaaagtaggttatacataaacacttgtata 4256608  T
Q  101 ataataacttatgcaataagtgctttattattgtctacctaaatgcattggcagtttttctataaactcccacttcatacata 183  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4256607 ataataacttatgcaataagtgctttattactgtctacctaaatgcattggcagtttttctataaactcccacttcatacata 4256525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 2951358 - 2951404
Alignment:
Q  175 tcatacatactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| ||||||| |||||||| |||||||||||||||||||||||    
T  2951358 tcatacttactagactttccacccgtgctgccgcacgggtcatatac 2951404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 38913744 - 38913785
Alignment:
Q  180 catactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  38913744 catactagactttccacccgtgctgccgcacgggtcatatac 38913785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 4266612 - 4266572
Alignment:
Q  181 atactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  4266612 atactagactttccacccgtgctgccgcacgggtcatatac 4266572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 29942249 - 29942209
Alignment:
Q  181 atactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  29942249 atactagactttccacccgtgctgccgcacgggtcatatac 29942209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 221
Target Start/End: Complemental strand, 1232026 - 1231987
Alignment:
Q  182 tactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  1232026 tactagactttccacccgtgctgccgcacgggtcatatac 1231987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 31018195 - 31018238
Alignment:
Q  178 tacatactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||| |||||| |||||||| |||||||||||||||||||||||    
T  31018195 tacacactagactttccacccgtgctgccgcacgggtcatatac 31018238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 9216260 - 9216222
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  9216260 actagactttccacccgtgctgccgcacgggtcatatac 9216222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 18855233 - 18855271
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  18855233 actagactttccacccgtgctgccgcacgggtcatatac 18855271  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 34888686 - 34888724
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  34888686 actagactttccacccgtgctgccgcacgggtcatatac 34888724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 50326228 - 50326192
Alignment:
Q  185 tagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||| |||||||| |||||||||||||||||||||||    
T  50326228 tagactttccacccgtgctgccgcacgggtcatatac 50326192  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 39058357 - 39058395
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39058357 actagattttccacctgtgctgccgcacgggtcatatac 39058395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 16917888 - 16917926
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  16917888 actagactttccacctgtgctgccgcacgggtcatatac 16917926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 12090457 - 12090497
Alignment:
Q  181 atactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  12090457 atactagactttccacccgtgctgccgcacgggtcatatac 12090497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 33139469 - 33139509
Alignment:
Q  181 atactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  33139469 atactagactttccacccgtgctgccgcacgggtcatatac 33139509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 30824921 - 30824960
Alignment:
Q  182 tactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  30824921 tactagactttccacccgtgctgccgcacgggtcatatac 30824960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 221
Target Start/End: Complemental strand, 37651896 - 37651857
Alignment:
Q  182 tactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  37651896 tactagactttccacccgtgctgccgcacgggtcatatac 37651857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 16904952 - 16904990
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  16904952 actagactttccacccgtgctgccgcacgggtcatatac 16904990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 18209740 - 18209702
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  18209740 actagactttccacccgtgctgccgcacgggtcatatac 18209702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 31965969 - 31966007
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  31965969 actagactttccacccgtgctgccgcacgggtcatatac 31966007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 35760810 - 35760772
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  35760810 actagattttccacccgtgctgccgcacgagtcatatac 35760772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 37590804 - 37590842
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  37590804 actagactttccacccgtgctgccgcacgggtcatatac 37590842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 52434853 - 52434815
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  52434853 actagactttccacccgtgctgccgcacgggtcatatac 52434815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 53143262 - 53143300
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  53143262 actagatttttcacccgtgctgccgcacgggtcatatac 53143300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 46256261 - 46256225
Alignment:
Q  185 tagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||| |||||||| |||||||||||||||||||||||    
T  46256261 tagactttccacccgtgctgccgcacgggtcatatac 46256225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 221
Target Start/End: Complemental strand, 13533997 - 13533958
Alignment:
Q  182 tactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  13533997 tactagattttccacccgtgctgccgcacgggtcatatac 13533958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 1405563 - 1405601
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  1405563 actagattttccacccgtgctgccgcacgggtcatatac 1405601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 8539784 - 8539744
Alignment:
Q  181 atactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  8539784 atactagactttccacccgtgctgccgcacgggtcatatac 8539744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 28099596 - 28099635
Alignment:
Q  182 tactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  28099596 tactagactttccacccgtgctgccgcacgggtcatatac 28099635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 221
Target Start/End: Complemental strand, 33646172 - 33646133
Alignment:
Q  182 tactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  33646172 tactagactttccacccgtgctgccgcacgggtcatatac 33646133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 162669 - 162707
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  162669 actagactttccacccgtgctgccgcacgggtcatatac 162707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 2267005 - 2266967
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  2267005 actagactttccacccgtgctgccgcacgggtcatatac 2266967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 3593122 - 3593084
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  3593122 actagactttccacccgtgctgccgcacgggtcatatac 3593084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 12597265 - 12597303
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  12597265 actagactttccacccgtgctgccgcacgggtcatatac 12597303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 14671940 - 14671902
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  14671940 actagatcttccacctgtgctgccgcacgtgtcatatac 14671902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 15044953 - 15044913
Alignment:
Q  181 atactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||||| |||||||| |||||||||||| ||||||||||    
T  15044953 atactagactttccacccgtgctgccgcacaggtcatatac 15044913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 19997892 - 19997856
Alignment:
Q  185 tagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||| |||||||| |||||||||||||||||||||||    
T  19997892 tagactttccacccgtgctgccgcacgggtcatatac 19997856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 6061 - 6099
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  6061 actagattttccacccgtgctgccgcacgggtcatatac 6099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 6071 - 6109
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  6071 actagattttccacccgtgctgccgcacgggtcatatac 6109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 28583084 - 28583046
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  28583084 actagattttccacccgtgctgccgcacgggtcatatac 28583046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 15961363 - 15961323
Alignment:
Q  181 atactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  15961363 atactagactttccacccgtgctgccgcacgggtcatatac 15961323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 23353620 - 23353660
Alignment:
Q  181 atactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  23353620 atactagactttccacccgtgctgccgcacgggtcatatac 23353660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 6299019 - 6299058
Alignment:
Q  182 tactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  6299019 tactagactttccacccgtgctgccgcacgggtcatatac 6299058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 995815 - 995853
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  995815 actagactttccacccgtgctgccgcacgggtcatatac 995853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 10478166 - 10478128
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  10478166 actagactttccacccgtgctgccgcacgggtcatatac 10478128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 18175610 - 18175572
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  18175610 actagactttccacccgtgctgccgcacgggtcatatac 18175572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 30473884 - 30473922
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  30473884 actagactttccacccgtgctgccgcacgggtcatatac 30473922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 32110861 - 32110899
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  32110861 actagactttccacccgtgctgccgcacgggtcatatac 32110899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 39997920 - 39997882
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  39997920 actagaatttccacccgtgctgccgcacgggtcatatac 39997882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 42308123 - 42308160
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatata 220  Q
    |||||||  |||||||||||||||||||||||||||||    
T  42308123 actagatcgtccacctgtgctgccgcacgggtcatata 42308160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 34110885 - 34110843
Alignment:
Q  179 acatactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||||||| |||||||| |||||||||||||||||||||||    
T  34110885 acatactagactttccacccgtgctgccgcacgggtcatatac 34110843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 20655047 - 20655087
Alignment:
Q  181 atactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  20655047 atactagactttccacccgtgctgccgcacgggtcatatac 20655087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 20874919 - 20874879
Alignment:
Q  181 atactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  20874919 atactagactttccacccgtgctgccgcacgggtcatatac 20874879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 40177272 - 40177232
Alignment:
Q  181 atactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  40177272 atactagactttccacccgtgctgccgcacgggtcatatac 40177232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 1396218 - 1396180
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||| |||||||||| |||||||||||||||||||||||    
T  1396218 actatattttccacccgtgctgccgcacgggtcatatac 1396180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 2398942 - 2398980
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  2398942 actagactttccacccgtgctgccgcacgggtcatatac 2398980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 10729442 - 10729480
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  10729442 actagactttccacccgtgctgccgcacgggtcatatac 10729480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 16526306 - 16526344
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  16526306 actagactttccacccgtgctgccgcacgggtcatatac 16526344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 17373160 - 17373198
Alignment:
Q  182 tactagattttccacctgtgctgccgcacgggtcatata 220  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  17373160 tactagactttccacccgtgctgccgcacgggtcatata 17373198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 34107338 - 34107376
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  34107338 actagactttccacccgtgctgccgcacgggtcatatac 34107376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 38246865 - 38246903
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  38246865 actagactttccacccgtgctgccgcacgggtcatatac 38246903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 33375995 - 33375955
Alignment:
Q  181 atactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| | |||||||| |||||||||||||||||||||||    
T  33375995 atactaaactttccacccgtgctgccgcacgggtcatatac 33375955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 13786401 - 13786361
Alignment:
Q  181 atactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  13786401 atactagactttccacccgtgctgccgcacgggtcatatac 13786361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 221
Target Start/End: Complemental strand, 21342053 - 21342014
Alignment:
Q  182 tactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  21342053 tactagactttccacccgtgctgccgcacgggtcatatac 21342014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 38163338 - 38163377
Alignment:
Q  182 tactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  38163338 tactagactttccacccgtgctgccgcacgggtcatatac 38163377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 16376545 - 16376583
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  16376545 actagactttccacccgtgctgccgcacgggtcatatac 16376583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 21804572 - 21804610
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  21804572 actagactttccacccgtgctgccgcacgggtcatatac 21804610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 31373685 - 31373647
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  31373685 actagactttccacccgtgctgccgcacgggtcatatac 31373647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 33916947 - 33916985
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  33916947 actagactttccacccgtgctgccgcacgggtcatatac 33916985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 40969120 - 40969082
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  40969120 actagactttccacccgtgctgccgcacgggtcatatac 40969082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 42242154 - 42242192
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  42242154 actagactttccacccgtgctgccgcacgggtcatatac 42242192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 27903417 - 27903454
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatata 220  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  27903417 actagactttccacccgtgctgccgcacgggtcatata 27903454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 47528038 - 47528079
Alignment:
Q  63 ttaattataaaagtaggttatacataaacacttgtataataa 104  Q
    ||||||||| || ||| |||||||||||||||||||||||||    
T  47528038 ttaattatagaaatagcttatacataaacacttgtataataa 47528079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 17178235 - 17178275
Alignment:
Q  181 atactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||||| |||||||| ||||||||||| |||||||||||    
T  17178235 atactagactttccacccgtgctgccgcatgggtcatatac 17178275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 21670212 - 21670172
Alignment:
Q  181 atactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||||| |||||||| |||||||||||| ||||||||||    
T  21670212 atactagactttccacccgtgctgccgcacaggtcatatac 21670172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 27138526 - 27138566
Alignment:
Q  181 atactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||||| |||||||| |||||||||||| ||||||||||    
T  27138526 atactagactttccacccgtgctgccgcacaggtcatatac 27138566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 26949029 - 26948989
Alignment:
Q  181 atactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  26949029 atactagactttccacccgtgctgccgcacgggtcatatac 26948989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 221
Target Start/End: Complemental strand, 3898652 - 3898613
Alignment:
Q  182 tactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  3898652 tactagactttccacccgtgctgccgcacgggtcatatac 3898613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 221
Target Start/End: Complemental strand, 21098534 - 21098495
Alignment:
Q  182 tactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  21098534 tactagactttccacccgtgctgccgcacgggtcatatac 21098495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 221
Target Start/End: Complemental strand, 34121585 - 34121546
Alignment:
Q  182 tactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  34121585 tactagactttccacccgtgctgccgcacgggtcatatac 34121546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 40014652 - 40014691
Alignment:
Q  182 tactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  40014652 tactagactttccacccgtgctgccgcacgggtcatatac 40014691  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 221
Target Start/End: Complemental strand, 49672792 - 49672753
Alignment:
Q  182 tactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  49672792 tactagactttccacccgtgctgccgcacgggtcatatac 49672753  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 1941720 - 1941758
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  1941720 actagactttccacccgtgctgccgcacgggtcatatac 1941758  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 4584434 - 4584472
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  4584434 actagactttccacccgtgctgccgcacgggtcatatac 4584472  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 6460168 - 6460206
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  6460168 actagactttccacccgtgctgccgcacgggtcatatac 6460206  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 12264429 - 12264391
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  12264429 actagactttccacccgtgctgccgcacgggtcatatac 12264391  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 36076454 - 36076492
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  36076454 actagactttccacccgtgctgccgcacgggtcatatac 36076492  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 38653927 - 38653965
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  38653927 actagactttccacccgtgctgccgcacgggtcatatac 38653965  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 43363611 - 43363649
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  43363611 actagactttccacccgtgctgccgcacgggtcatatac 43363649  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 54073259 - 54073222
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatata 220  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  54073259 actagactttccacccgtgctgccgcacgggtcatata 54073222  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 41664741 - 41664701
Alignment:
Q  181 atactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  41664741 atactagactttccacccgtgctgccgcacgggtcatatac 41664701  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 221
Target Start/End: Complemental strand, 44902311 - 44902272
Alignment:
Q  182 tactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  44902311 tactagactttccacccgtgctgccgcacgggtcatatac 44902272  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 6120781 - 6120743
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  6120781 actagactttccacccgtgctgccgcacgggtcatatac 6120743  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 8700490 - 8700452
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  8700490 actagactttccacccgtgctgccgcacgggtcatatac 8700452  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 18351780 - 18351742
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  18351780 actagactttccacccgtgctgccgcacgggtcatatac 18351742  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 19596363 - 19596401
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  19596363 actagactttccacccgtgctgccgcacgggtcatatac 19596401  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 20545054 - 20545016
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  20545054 actagactttccacccgtgctgccgcacgggtcatatac 20545016  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 27944796 - 27944834
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  27944796 actagactttccacccgtgctgccgcacgggtcatatac 27944834  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 25889037 - 25889077
Alignment:
Q  181 atactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||||| |||||||  |||||||||||||||||||||||    
T  25889037 atactagactttccactcgtgctgccgcacgggtcatatac 25889077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 41663468 - 41663428
Alignment:
Q  181 atactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||||| |||||||| ||||||||||| |||||||||||    
T  41663468 atactagactttccacccgtgctgccgcatgggtcatatac 41663428  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 42442195 - 42442155
Alignment:
Q  181 atactagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||||| |||||||| ||| |||||||||||||||||||    
T  42442195 atactagactttccacccgtgttgccgcacgggtcatatac 42442155  T

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Target: scaffold0031 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 46503 - 46465
Alignment:
Q  183 actagattttccacctgtgctgccgcacgggtcatatac 221  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  46503 actagactttccacccgtgctgccgcacgggtcatatac 46465  T

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Target: scaffold0022 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 149049 - 149087
Alignment:
Q  182 tactagattttccacctgtgctgccgcacgggtcatata 220  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  149049 tactagactttccacccgtgctgccgcacgggtcatata 149087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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