View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16680_low_2 (Length: 318)
Name: NF16680_low_2
Description: NF16680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16680_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 8 - 312
Target Start/End: Complemental strand, 34353017 - 34352713
Alignment:
| Q |
8 |
gacatcatcaaagtgaaaagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
107 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34353017 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
34352918 |
T |
|
| Q |
108 |
cgctcattttccgctattttgaaatcagaagttgtgagttgagaaaatagtgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
207 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352917 |
cgctcattctccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
34352818 |
T |
|
| Q |
208 |
gaagagtgtagagccttctccttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccaaatctcctttgccgtcttcat |
307 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
34352817 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccaaatctcctttgccgtcttctt |
34352718 |
T |
|
| Q |
308 |
ttcag |
312 |
Q |
| |
|
||||| |
|
|
| T |
34352717 |
ttcag |
34352713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 8 - 312
Target Start/End: Complemental strand, 41719414 - 41719110
Alignment:
| Q |
8 |
gacatcatcaaagtgaaaagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
107 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41719414 |
gacatcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
41719315 |
T |
|
| Q |
108 |
cgctcattttccgctattttgaaatcagaagttgtgagttgagaaaatagtgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41719314 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
41719215 |
T |
|
| Q |
208 |
gaagagtgtagagccttctccttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccaaatctcctttgccgtcttcat |
307 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| | |
|
|
| T |
41719214 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagtgtatcccagatctcctttgctgtcttctt |
41719115 |
T |
|
| Q |
308 |
ttcag |
312 |
Q |
| |
|
||||| |
|
|
| T |
41719114 |
ttcag |
41719110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 298
Target Start/End: Complemental strand, 23319295 - 23319006
Alignment:
| Q |
9 |
acatcatcaaagtgaaaagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcac |
108 |
Q |
| |
|
||||||||||| |||| || ||||| || || || ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||| |||| |
|
|
| T |
23319295 |
acatcatcaaaatgaagagagtcagcaatattgttgtttgtaatgttgatgatgagttgttcatatgaatgaggtaaactctgaagtagaagttttgcac |
23319196 |
T |
|
| Q |
109 |
gctcattttccgctattttgaaatcagaagttgtgagttgagaaaatagtgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcg |
208 |
Q |
| |
|
| |||||||| ||||| ||| ||| || | |||||| |||| |||||||||||| | ||| || ||||||| |||| ||| |||| ||| ||||| |
|
|
| T |
23319195 |
gttcattttcagctatcatgacatctgaggctgtgagctgagcaaatagtgtatttatggtatttatgtgatttgttattgatatggactcatacattca |
23319096 |
T |
|
| Q |
209 |
aagagtgtagagccttctccttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccaaatctcctttgc |
298 |
Q |
| |
|
|||||||||| ||| || ||||||| ||||| ||| ||||||||||||||||||||||| || |||| ||| | ||||||||||| |
|
|
| T |
23319095 |
gagagtgtagaacctcctttttaagaaaattcttgcgtgaagtgatttgacctcgtacaatttaataagagcatcttagatctcctttgc |
23319006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 31502529 - 31502590
Alignment:
| Q |
28 |
tatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactc |
89 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31502529 |
tatcatctatattattatttgtaatgttgatgatgagttgatcatacgaatcttgtaaactc |
31502590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 8 - 312
Target Start/End: Original strand, 5822588 - 5822892
Alignment:
| Q |
8 |
gacatcatcaaagtgaaaagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
107 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5822588 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
5822687 |
T |
|
| Q |
108 |
cgctcattttccgctattttgaaatcagaagttgtgagttgagaaaatagtgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5822688 |
cgctcattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
5822787 |
T |
|
| Q |
208 |
gaagagtgtagagccttctccttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccaaatctcctttgccgtcttcat |
307 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| | |
|
|
| T |
5822788 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagtgtatcccagatctcctttgctgtcttctt |
5822887 |
T |
|
| Q |
308 |
ttcag |
312 |
Q |
| |
|
||||| |
|
|
| T |
5822888 |
ttcag |
5822892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 8 - 310
Target Start/End: Original strand, 2816576 - 2816878
Alignment:
| Q |
8 |
gacatcatcaaagtgaaaagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
107 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2816576 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctaaagtagaagttcagca |
2816675 |
T |
|
| Q |
108 |
cgctcattttccgctattttgaaatcagaagttgtgagttgagaaaatagtgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2816676 |
cgctcattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
2816775 |
T |
|
| Q |
208 |
gaagagtgtagagccttctccttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccaaatctcctttgccgtcttcat |
307 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||| | |
|
|
| T |
2816776 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattaaagtatcccagatctcctttgctgtcttctt |
2816875 |
T |
|
| Q |
308 |
ttc |
310 |
Q |
| |
|
||| |
|
|
| T |
2816876 |
ttc |
2816878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 9 - 298
Target Start/End: Complemental strand, 42585960 - 42585671
Alignment:
| Q |
9 |
acatcatcaaagtgaaaagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcac |
108 |
Q |
| |
|
||||||||||| |||| || ||| | || || ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| |
|
|
| T |
42585960 |
acatcatcaaaatgaagagagtcaacaatattgttatttgtaatattgatgatgagttgatcatatgaatcaggtaaactctgaagtagaagttctgcac |
42585861 |
T |
|
| Q |
109 |
gctcattttccgctattttgaaatcagaagttgtgagttgagaaaatagtgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcg |
208 |
Q |
| |
|
| |||||||| |||||| ||||||| || | |||||| |||| |||||||||||||| ||| || ||||||| |||| ||| |||||||| |||||| |
|
|
| T |
42585860 |
gttcattttcagctattgtgaaatctgaggctgtgagctgagcaaatagtgtattcatggtatttatgtgatttgttattgatatggattcattcattcg |
42585761 |
T |
|
| Q |
209 |
aagagtgtagagccttctccttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccaaatctcctttgc |
298 |
Q |
| |
|
|||||||||||||| || ||||||| ||||| |||| ||||| ||||||||||||||||| || |||| |||||| ||||||||||| |
|
|
| T |
42585760 |
gagagtgtagagcctcctttttaagaaaattcttgtgtgaagtgacttgacctcgtacaatttaataagagcatcccagatctcctttgc |
42585671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 39 - 297
Target Start/End: Original strand, 47277124 - 47277381
Alignment:
| Q |
39 |
ttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttca--gcacgctcattttccgctattttgaaatcaga |
136 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||| || |||| ||||| |||||||||||||| ||| ||||||||||||| || | ||| ||| |
|
|
| T |
47277124 |
ttattgttggtaatgttgatgatgaggtgatcatacaaagatggttaactcagaagtagaagttcaacacacactcattttccgcttttctaaaacgaga |
47277223 |
T |
|
| Q |
137 |
agttgtgagttgagaaaatagtgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcgaagagtgtagagccttctccttaagaat |
236 |
Q |
| |
|
||||||||| ||||||||| | |||||| |||||| ||||||| ||| || |||||||||||| ||| || ||||||| | |||| |||| ||| |
|
|
| T |
47277224 |
agttgtgagatgagaaaattgcatattcaaggtgtt-atgtgatatgtt--tgacgtggattcacccgttcaaaaagtgtagtgtcttccttttaataat |
47277320 |
T |
|
| Q |
237 |
attctgttgtggagtgatttgacctcgtacaattttattagagtatcccaaatctcctttg |
297 |
Q |
| |
|
||| | ||||| | ||||| | |||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
47277321 |
attttattgtgaaatgattatatctcgtataattttattagagtatcacatatctcctttg |
47277381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 271
Target Start/End: Complemental strand, 25877693 - 25877574
Alignment:
| Q |
152 |
aaatagtgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcgaagagtgtagagccttctccttaagaatattctgttgtggagt |
251 |
Q |
| |
|
|||||||||||||| |||||| ||||||| |||| ||| |||||||| ||||| |||||| |||||||| || ||||||| ||||| |||| ||| |
|
|
| T |
25877693 |
aaatagtgtattcatggtgtttatgtgatttgttattgatatggattcattcattcaaagagtatagagcctcctttttaagaaaattcttgtgtgaagt |
25877594 |
T |
|
| Q |
252 |
gatttgacctcgtacaattt |
271 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
25877593 |
gacttgacctcgtacaattt |
25877574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 8 - 312
Target Start/End: Complemental strand, 42266907 - 42266603
Alignment:
| Q |
8 |
gacatcatcaaagtgaaaagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
107 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266907 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
42266808 |
T |
|
| Q |
108 |
cgctcattttccgctattttgaaatcagaagttgtgagttgagaaaatagtgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42266807 |
cgctcattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattcagggtgttgatgtgatctgttacggatgtggattcacccattc |
42266708 |
T |
|
| Q |
208 |
gaagagtgtagagccttctccttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccaaatctcctttgccgtcttcat |
307 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| | |
|
|
| T |
42266707 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagtgtatcccagatctcctttgctgtcttctt |
42266608 |
T |
|
| Q |
308 |
ttcag |
312 |
Q |
| |
|
||||| |
|
|
| T |
42266607 |
ttcag |
42266603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 8 - 304
Target Start/End: Original strand, 30949496 - 30949792
Alignment:
| Q |
8 |
gacatcatcaaagtgaaaagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
107 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30949496 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctggagtagaagttcagca |
30949595 |
T |
|
| Q |
108 |
cgctcattttccgctattttgaaatcagaagttgtgagttgagaaaatagtgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30949596 |
cgctcattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattcagggtgttgatgtgatctgttacggatgtggattcacccattc |
30949695 |
T |
|
| Q |
208 |
gaagagtgtagagccttctccttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccaaatctcctttgccgtctt |
304 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
30949696 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtctt |
30949792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 8 - 312
Target Start/End: Original strand, 48701134 - 48701438
Alignment:
| Q |
8 |
gacatcatcaaagtgaaaagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
107 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48701134 |
gacatcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
48701233 |
T |
|
| Q |
108 |
cgctcattttccgctattttgaaatcagaagttgtgagttgagaaaatagtgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48701234 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
48701333 |
T |
|
| Q |
208 |
gaagagtgtagagccttctccttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccaaatctcctttgccgtcttcat |
307 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| | |
|
|
| T |
48701334 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagtgtatcccagatctcctttgctgtcttctt |
48701433 |
T |
|
| Q |
308 |
ttcag |
312 |
Q |
| |
|
||||| |
|
|
| T |
48701434 |
ttcag |
48701438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 46 - 180
Target Start/End: Complemental strand, 1999857 - 1999723
Alignment:
| Q |
46 |
ttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagttgtgag |
145 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||| |||||| ||||||| || | |||||| |
|
|
| T |
1999857 |
ttgtaatattgatgatgagttgatcatatgaatcaggtaaactctgaagtagaagttctgcacgttcattttcagctattgtgaaatctgaggctgtgag |
1999758 |
T |
|
| Q |
146 |
ttgagaaaatagtgtattcagggtgttgatgtgat |
180 |
Q |
| |
|
||||| |||||||||||||| ||| || ||||||| |
|
|
| T |
1999757 |
ttgaggaaatagtgtattcatggtatttatgtgat |
1999723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 49 - 280
Target Start/End: Original strand, 21514391 - 21514622
Alignment:
| Q |
49 |
taatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagttgtgagttg |
148 |
Q |
| |
|
||||||||| |||||||| ||||||| |||||| |||| || ||||||||||| | | | |||| |||||| |||| |||||| |||||||| ||||| |
|
|
| T |
21514391 |
taatgttgacgatgagtttatcatacaaatctgataaaaactaaagtagaagtttaactctctcactttccgttattctgaaatttgaagttgtaagttg |
21514490 |
T |
|
| Q |
149 |
agaaaatagtgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcgaagagtgtagagccttctccttaagaatattctgttgtgg |
248 |
Q |
| |
|
|||||| ||||| ||||| |||||||||| ||| | ||||||||| |||||||||||||||||||||| | |||||||||||| |||||| |
|
|
| T |
21514491 |
gaaaaataacgtatttagggtattgatgtgatatgttgttgtcttggattcactcattcgaagagtgtagagccttatttttaagaatattcagttgtga |
21514590 |
T |
|
| Q |
249 |
agtgatttgacctcgtacaattttattagagt |
280 |
Q |
| |
|
||| |||||||||||| |||||||| |||||| |
|
|
| T |
21514591 |
agtaatttgacctcgttcaattttactagagt |
21514622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 298
Target Start/End: Complemental strand, 1999695 - 1999628
Alignment:
| Q |
231 |
aagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccaaatctcctttgc |
298 |
Q |
| |
|
||||| ||||| |||| ||||| ||||||||||||||||| || |||| |||||| ||||||||||| |
|
|
| T |
1999695 |
aagaaaattcttgtgtgaagtgacttgacctcgtacaatttaataagagcatcccatatctcctttgc |
1999628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 8 - 312
Target Start/End: Original strand, 9443405 - 9443709
Alignment:
| Q |
8 |
gacatcatcaaagtgaaaagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
107 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443405 |
gacatcattaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
9443504 |
T |
|
| Q |
108 |
cgctcattttccgctattttgaaatcagaagttgtgagttgagaaaatagtgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9443505 |
cgctcattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattcagggtgttgatgtgatctgttacggatgtggattcacccattc |
9443604 |
T |
|
| Q |
208 |
gaagagtgtagagccttctccttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccaaatctcctttgccgtcttcat |
307 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| | |
|
|
| T |
9443605 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagtgtatcccagatctcctttgctgtcttctt |
9443704 |
T |
|
| Q |
308 |
ttcag |
312 |
Q |
| |
|
||||| |
|
|
| T |
9443705 |
ttcag |
9443709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 42 - 298
Target Start/End: Original strand, 24597829 - 24598085
Alignment:
| Q |
42 |
ttatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagttg |
141 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||| |||||| ||||||| || | || |
|
|
| T |
24597829 |
ttatttgtaatattgatgatgagttgatcatatgaatcaggtaaactctgaagtagaagttctgcacgttcattttcagctattgtgaaatctgaggctg |
24597928 |
T |
|
| Q |
142 |
tgagttgagaaaatagtgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcgaagagtgtagagccttctccttaagaatattct |
241 |
Q |
| |
|
|||| |||| |||||||||||||| ||| || ||||||| |||| ||| |||||||| |||||| |||||||||||||| || ||||||| ||||| |
|
|
| T |
24597929 |
tgagctgagcaaatagtgtattcatggtatttatgtgatttgttattgatatggattcattcattcggagagtgtagagcctcctttttaagaaaattct |
24598028 |
T |
|
| Q |
242 |
gttgtggagtgatttgacctcgtacaattttattagagtatcccaaatctcctttgc |
298 |
Q |
| |
|
|||| ||||| ||||||||||||||||| || |||| |||||| ||||||||||| |
|
|
| T |
24598029 |
tgtgtgaagtgacttgacctcgtacaatttaataagagcatcccagatctcctttgc |
24598085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 8 - 312
Target Start/End: Original strand, 27878022 - 27878326
Alignment:
| Q |
8 |
gacatcatcaaagtgaaaagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
107 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878022 |
gacatcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
27878121 |
T |
|
| Q |
108 |
cgctcattttccgctattttgaaatcagaagttgtgagttgagaaaatagtgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878122 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
27878221 |
T |
|
| Q |
208 |
gaagagtgtagagccttctccttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccaaatctcctttgccgtcttcat |
307 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| | |
|
|
| T |
27878222 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagtgtatcccagatctcctttgctgtcttctt |
27878321 |
T |
|
| Q |
308 |
ttcag |
312 |
Q |
| |
|
||||| |
|
|
| T |
27878322 |
ttcag |
27878326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 142 - 296
Target Start/End: Complemental strand, 30968279 - 30968125
Alignment:
| Q |
142 |
tgagttgagaaaatagtgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcgaagagtgtagagccttctccttaagaatattct |
241 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30968279 |
tgagttgagaaaatagcgtattcagggtgttgatgtgattcgttacggatgtggattcacccattcgaagagtgtagagccttctctttaagaatattct |
30968180 |
T |
|
| Q |
242 |
gttgtggagtgatttgacctcgtacaattttattagagtatcccaaatctccttt |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
30968179 |
gttgtggagtgatttgacctcgtacaattttattagaatatcccagatctccttt |
30968125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 30968375 - 30968283
Alignment:
| Q |
8 |
gacatcatcaaagtgaaaagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaag |
100 |
Q |
| |
|
|||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30968375 |
gacatcataaaagtgaagagtatcagatatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaag |
30968283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 45 - 180
Target Start/End: Original strand, 8480156 - 8480291
Alignment:
| Q |
45 |
tttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagttgtga |
144 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| | |||||| ||||| ||||||| || ||||||| |
|
|
| T |
8480156 |
tttgtaatgttgatgatgagttgatcatatgaatcaggtaaactctgaagtagaagttctgcacgtttattttcagctatcatgaaatctgatgttgtga |
8480255 |
T |
|
| Q |
145 |
gttgagaaaatagtgtattcagggtgttgatgtgat |
180 |
Q |
| |
|
| |||| |||||||||||||| |||||| ||||||| |
|
|
| T |
8480256 |
gctgagcaaatagtgtattcatggtgtttatgtgat |
8480291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 111 - 304
Target Start/End: Complemental strand, 8481296 - 8481103
Alignment:
| Q |
111 |
tcattttccgctattttgaaatcagaagttgtgagttgagaaaatagtgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcgaa |
210 |
Q |
| |
|
|||||||| ||||| |||||| || | |||||| |||| | ||||| |||||| |||||| ||||||| |||| ||| |||||||| |||||| | |
|
|
| T |
8481296 |
tcattttcagctatcgtgaaatttgatgatgtgagctgagcagatagtatattcatggtgtttatgtgatttgttattgatatggattcattcattcgga |
8481197 |
T |
|
| Q |
211 |
gagtgtagagccttctccttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccaaatctcctttgccgtctt |
304 |
Q |
| |
|
||||||||||||| || | ||||| ||| | | || ||||| ||||||||||||||||| || ||||||||| | |||||| |||| ||||| |
|
|
| T |
8481196 |
gagtgtagagcctccttttcaagaaaattattgtttgaagtgacttgacctcgtacaatttaataagagtatcctagatctcccttgcagtctt |
8481103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 8 - 312
Target Start/End: Complemental strand, 826483 - 826179
Alignment:
| Q |
8 |
gacatcatcaaagtgaaaagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
107 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
826483 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
826384 |
T |
|
| Q |
108 |
cgctcattttccgctattttgaaatcagaagttgtgagttgagaaaatagtgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
826383 |
cgctcattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattaagggtgttgatgtgatctgttacggatgtggattcacccattc |
826284 |
T |
|
| Q |
208 |
gaagagtgtagagccttctccttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccaaatctcctttgccgtcttcat |
307 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| | |
|
|
| T |
826283 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagtgtatcccagatctcctttgctgtcttctt |
826184 |
T |
|
| Q |
308 |
ttcag |
312 |
Q |
| |
|
||||| |
|
|
| T |
826183 |
ttcag |
826179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 8 - 280
Target Start/End: Original strand, 13843110 - 13843382
Alignment:
| Q |
8 |
gacatcatcaaagtgaaaagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
107 |
Q |
| |
|
||||||||||||||||| ||| ||| |||| || ||||||||||||||||||||||||||||||||| ||| || || ||| ||||||||||||||| || |
|
|
| T |
13843110 |
gacatcatcaaagtgaagagtgtcaactatattgttatttgtaatgttgatgatgagttgatcatacaaatttgatatactatgaagtagaagttcaaca |
13843209 |
T |
|
| Q |
108 |
cgctcattttccgctattttgaaatcagaagttgtgagttgagaaaatagtgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
207 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||| |||||||||||||||||||||| ||| || ||||||| |||| ||||||||||||| ||||| |
|
|
| T |
13843210 |
tgctcattttctgctattatgaaatcagaagttgtaagttgagaaaatagtgtattcaaggtcttaatgtgatatgttattgatgtggattcactcattc |
13843309 |
T |
|
| Q |
208 |
gaagagtgtagagccttctccttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagt |
280 |
Q |
| |
|
||||||||||||||| | ||||||||||| |||| || ||| |||||||||||||||||||||||||||| |
|
|
| T |
13843310 |
taagagtgtagagcctcccatttaagaatattatgttatgaagttatttgacctcgtacaattttattagagt |
13843382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 312
Target Start/End: Original strand, 8137771 - 8138075
Alignment:
| Q |
8 |
gacatcatcaaagtgaaaagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
107 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||| || |
|
|
| T |
8137771 |
gacattatcaaagtgaagagtatcagctatgttattatttggaatgttgatgatgagttgatcatacaaatatggtaaactctgaagtagaagttccaca |
8137870 |
T |
|
| Q |
108 |
cgctcattttccgctattttgaaatcagaagttgtgagttgagaaaatagtgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
207 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| || || |||||||| ||||||||||||||||||||||| |||| | |||||||||||||||||| |
|
|
| T |
8137871 |
cgctcattttccgctattttgaaattagaagttgggattttagaaaataccgtattcagggtgttgatgtgatctgttatgaatgtggattcacccattc |
8137970 |
T |
|
| Q |
208 |
gaagagtgtagagccttctccttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccaaatctcctttgccgtcttcat |
307 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||| | |
|
|
| T |
8137971 |
gaagagtgtagagcctcctctttaagaatattctgttgcggagtgatttgacctcgtacaattttattagagtatccccgatctcgtttgttgtcttctt |
8138070 |
T |
|
| Q |
308 |
ttcag |
312 |
Q |
| |
|
||||| |
|
|
| T |
8138071 |
ttcag |
8138075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 46452619 - 46452552
Alignment:
| Q |
49 |
taatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcatttt |
117 |
Q |
| |
|
|||||||||||||||||| |||||| || ||| |||||| ||||||||||||| ||||| |||||||| |
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| T |
46452619 |
taatgttgatgatgagttcatcatagga-tctaataaactatgaagtagaagtttagcacactcatttt |
46452552 |
T |
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