View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16680_low_3 (Length: 244)
Name: NF16680_low_3
Description: NF16680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16680_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 228
Target Start/End: Original strand, 33050299 - 33050518
Alignment:
| Q |
9 |
ggcgatgaatcacaggttgctcataatgaaggttatgattcagatgaagtcctcttgatggccacaatcaaaattggtgaggaacaaaatgatgaagatg |
108 |
Q |
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| T |
33050299 |
ggcgatgaatcacaggttgctcataatgagggttatgattcagatgaagtcctcttgatggctacaatcaaaattggtgaggaacaaaatgatgaagatg |
33050398 |
T |
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| Q |
109 |
gtatatggatacatgatgctcaaattacataacaggttaaaagtcttggtactctaaattagattattcaattaatagaaagataagatttgtagataat |
208 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
33050399 |
gtatctggatacatgatgctcaaattacataacatgttaaaagtcttggtactctaaattagattattcaattaatagaaagataagattcgcagataat |
33050498 |
T |
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| Q |
209 |
agtatagattatgttgaagg |
228 |
Q |
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||||| |||||||||||||| |
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| T |
33050499 |
agtatcgattatgttgaagg |
33050518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 5313459 - 5313674
Alignment:
| Q |
12 |
gatgaatcacaggttgctcataatgaaggttatgattcagatgaagtcctcttgatggccacaatcaaaattggtgaggaacaaaatgatgaagatggta |
111 |
Q |
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| T |
5313459 |
gatgaagcacaatttgatcataatgattgttatgactcaaatgaagtcttcttgttggctacaatcaaaactgatgatgaacataatggtgaa--tggta |
5313556 |
T |
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| Q |
112 |
tatggatacatgatgctcaaattacataacaggttaaaa-gtcttggtactctaaattagattattcaattaatagaaagataagatttgtagataatag |
210 |
Q |
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| T |
5313557 |
tatggatacacgatgctcaaatcatatgacaggtaaaaaagtcttggttctctgagttagatggttcaattagtaaaaagacaagatttgcaaataatag |
5313656 |
T |
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| Q |
211 |
tatagattatgttgaagg |
228 |
Q |
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||||| || |||| |||| |
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| T |
5313657 |
tatagtttgtgttaaagg |
5313674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 45495828 - 45495767
Alignment:
| Q |
154 |
ttggtactctaaattagattattcaattaatagaaagataagatttgtagataatagtatag |
215 |
Q |
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| T |
45495828 |
ttggttctctgaattagatgattcagttaatagaaaaataagatttgtagacaatagtatag |
45495767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 45503570 - 45503509
Alignment:
| Q |
154 |
ttggtactctaaattagattattcaattaatagaaagataagatttgtagataatagtatag |
215 |
Q |
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| T |
45503570 |
ttggttctctgaattagatgattcagttaatagaaaaataagatttgtagacaatagtatag |
45503509 |
T |
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