View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16681_high_4 (Length: 403)
Name: NF16681_high_4
Description: NF16681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16681_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 39176427 - 39176801
Alignment:
| Q |
18 |
aggaacggcacgaagaaaatgaaaatgaggtggagtggatcgacccgagaggttgcgtatatttattctgtcttaacaatcaaatatggtatggtcatgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39176427 |
aggaacggcacgaagaaaatgaaaatgaggtggagtggatcgacccgagaggttatgtatatttattctgtcttaacaatcaaatatggtatggtcatgg |
39176526 |
T |
|
| Q |
118 |
actcatgggccgtcataggctgattccatattaaaatcgatttaattggaaaaatcgatttccatattcgtttttgaatttgtagctgggtttttgtaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39176527 |
actcatgggccgtcataggctgattccatattaaaatcgatttaattggaaaaatcgatttccatattcgtttttgaatttgtagctgggtttttgtaaa |
39176626 |
T |
|
| Q |
218 |
ttgtagttaatgcttttaaaggtggtagagttatatttgataatgtactatttcaaatatgcaattgtccaaatagcataattctgttcttggtatacca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39176627 |
ttgtagttaatgcttttaaaggtggtagagttatatttgacaatgtactatttcaaatatggaattgtccaaatagcataattctgttcttggtatacca |
39176726 |
T |
|
| Q |
318 |
taacaacaaaaactgcagcttattctacaattaatttcattttcttcttatttactcttgttcatttcatctttt |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
39176727 |
taacaacaaaaactgcagcttattctacaattaatttcattttcttcttatctactcttgttcatttcaactttt |
39176801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 392
Target Start/End: Original strand, 39172540 - 39172929
Alignment:
| Q |
16 |
tcaggaacggcacgaagaaaatgaaaatgaggtggagtggatcgacccgagaggttgcgtatatttattctgtcttaacaatcaaatatggtatggtcat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39172540 |
tcaggaacggcacgaagaaaatgaaaatgaggtggagtggattgacccgagaggttacgtttatttattctgtcttaacaatcaaatatggtatggtcat |
39172639 |
T |
|
| Q |
116 |
ggactcatgggccgtcataggctg----------attccatattaaaatcgatttaattggaaaaatcgatttccatattcgtttttgaatttgtagctg |
205 |
Q |
| |
|
|||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39172640 |
ggactcatgggctgtcataggcagtcgtgggccgattccatattaaaatcgatttaattggaaaaatcgatttccatattcgtttttgaatttgtagctg |
39172739 |
T |
|
| Q |
206 |
ggtttttgtaaattgtagttaatgcttttaaaggtggtagagttatatttgataatgtactatttcaaatatgcaattgtccaaatagcataattctgtt |
305 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||| |
|
|
| T |
39172740 |
ggtttttgtaaattgtagttaatgctttt-aaggtgggagagttatatttgataatgtactatttcaaatatgcagttgtcc-aatagcttaattctgtt |
39172837 |
T |
|
| Q |
306 |
cttggtataccataacaacaaaaactgcagcttattctac----aattaatttcattttcttc-ttatttactcttgttcatttcatctttt |
392 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| ||||||| ||||||||||||||||||| |||| ||||| |||||| |||| ||||| |
|
|
| T |
39172838 |
cttggtataccaaaacaacaaaaactgaagctcattctacaattaattaatttcattttcttctttatctactcctgttcaattcaactttt |
39172929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University