View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16681_high_5 (Length: 375)

Name: NF16681_high_5
Description: NF16681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16681_high_5
NF16681_high_5
[»] chr1 (1 HSPs)
chr1 (1-375)||(4256685-4257059)


Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 4256685 - 4257059
Alignment:
Q  1 atcaatcatcgttgatgaattaagcaaatcaaaatacatcaaggtgaaacattatgccaaatagaaaatttgttaggagcattgcgatgcagaatgtcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4256685 atcaatcatcgttgatgaattaagcaaatcaaaatacatcaaggtgaaacattatgccaaatagaaaatttgttaggagcattgcgatgcagaatgtcaa 4256784  T
Q  101 attacaaacataatggcatatgctttttcaaagaagtttgaagtgttgagatcataacttaaagagttatgatgtctttttgatggttgtgtgtttctta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4256785 attacaaacataatggcatatgctttttcaaagaagtttgaagtgttgagatcataacttaaagagttatgatgtctttttgatggttgtgtgtttctta 4256884  T
Q  201 atttggctctgaaaaatgaataaaattacactatttgttctcctctgacctcacttttgctttaaaaatcggttgctctatttatttttcgaataggtat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4256885 atttggctctgaaaaatgaataaaattacactatttgttctcctctgacctcacttttgctttaaaaatcggttgctctatttatttttcgaataggtat 4256984  T
Q  301 aaacacgatggacaagacgtcactcattaattttgcaaggtcttacttgaagaataagaggtatgtggtttactt 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4256985 aaacacgatggacaagacgtcactcattaattttgcaaggtcttacttgaagaataagaggtatgtggtttactt 4257059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University