View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16681_low_1 (Length: 416)
Name: NF16681_low_1
Description: NF16681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16681_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 17 - 414
Target Start/End: Complemental strand, 2773129 - 2772732
Alignment:
| Q |
17 |
acatgatcataacacaatttcaaatgaagtcacttcttatttgaggactatcatcgacatgagttagacatgttcataacgtgcaattttgacacattga |
116 |
Q |
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| T |
2773129 |
acatgatcataacacaatttcaaatgaagtcgcttcttatttgaggactatcatcgacatgagttagacatgttcataacgtgcaattttgacacattgc |
2773030 |
T |
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| Q |
117 |
ggcacaaatacacagttcacataatcacaacacaatttcaaattactcatgtctgaacatttcaattattaatataataatacatagcaatgactcaaac |
216 |
Q |
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| T |
2773029 |
ggcacaaatacacagttcatataatcacaacacaatttcaaattactcatgtctgaacatttcaattattaatataataatacatagcaatgattcaaac |
2772930 |
T |
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| Q |
217 |
attataacatagaagttacttcactttagatacaacatagtcagtcaagaatggcaattcatgatatataacaatacaaaatccaatcaatgaataagca |
316 |
Q |
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| T |
2772929 |
attataacatagaagttacttcactttagatacaacatagtcaatcaagaatggcaattcatgatatataacaatacaaaatccaatcaatgaataagca |
2772830 |
T |
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| Q |
317 |
accgaataaacaaaccttctggtgatcatttgaaaaatcacatcggaaaattcttccccttcataataacattataattatttgacctatgcttctcc |
414 |
Q |
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| T |
2772829 |
accgaagaaacaaaccttctggtgatcatttgaaaaatcacatcggcaaattcttccccttgataataacattataattatttgacctatgtttctcc |
2772732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 159
Target Start/End: Complemental strand, 2773213 - 2773105
Alignment:
| Q |
49 |
cttcttatttgaggactatcatcgacatgagttagacatgttcataacgtgcaattttgacacattgaggcacaaatacacagttcacataatcacaaca |
148 |
Q |
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| T |
2773213 |
cttcttatttgaggataatcgccaacatgagttagacatattcataatgcgcaatt--gacacattgcgacacaaatacatagttcacatgatcataaca |
2773116 |
T |
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| Q |
149 |
caatttcaaat |
159 |
Q |
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| T |
2773115 |
caatttcaaat |
2773105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 201
Target Start/End: Original strand, 33492460 - 33492543
Alignment:
| Q |
118 |
gcacaaatacacagttcacataatcacaacacaatttcaaattactcatgtctgaacatttcaattattaatataataatacat |
201 |
Q |
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| T |
33492460 |
gcacaaatacactattctcatagtcacaccacaatttcaagttactcatgattggacatctcagttattcatataataacacat |
33492543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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