View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16681_low_3 (Length: 406)

Name: NF16681_low_3
Description: NF16681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16681_low_3
NF16681_low_3
[»] chr7 (4 HSPs)
chr7 (137-390)||(42763787-42764040)
chr7 (137-390)||(42806545-42806795)
chr7 (7-65)||(42806868-42806926)
chr7 (5-65)||(42764112-42764172)
[»] chr4 (2 HSPs)
chr4 (137-390)||(33049764-33050014)
chr4 (7-65)||(33050086-33050144)
[»] chr2 (1 HSPs)
chr2 (297-390)||(26429814-26429907)


Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 137 - 390
Target Start/End: Complemental strand, 42764040 - 42763787
Alignment:
Q  137 ggtgtgtgtgcttgtacataacaatttcattgatacaattttagtgtttattaagtgtggggcaaaatttctttccataatgtcttacaacaaaagacaa 236  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42764040 ggtgtgtgtgcttgtgcataacaatttcattgatacaattttagtgtttattaagtgtggggcaaaatttctttccataatgtcttacaacaaaagacaa 42763941  T
Q  237 tattataaaaggataaaaaatgtgtacctcgcataccaggatgcttaaagttatactccctattgggatgaagcatggttagaaagtgggaagatgcttg 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42763940 tattataaaaggataaaaaatgtgtacctcgcataccaggatgcttaaagttatactccctattgggatgaagcatggttagaaagtgggaagatgcttg 42763841  T
Q  337 ctcccatacctatatcattgataatttgaataaagccagagcaagggaggttat 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42763840 ctcccatacctatatcattgataatttgaataaagccagagcaagggaggttat 42763787  T

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Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 137 - 390
Target Start/End: Complemental strand, 42806795 - 42806545
Alignment:
Q  137 ggtgtgtgtgcttgtacataacaatttcattgatacaattttagtgtttattaagtgtggggcaaaatttctttccataatgtcttacaacaaaagacaa 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  42806795 ggtgtgtgtgcttgtacataacaatttcattgatacaattttagtgtttattacgtgtggggcaaaatttctttccattatgtcttacaacaaaagacaa 42806696  T
Q  237 tattataaaaggataaaaaatgtgtacctcgcataccaggatgcttaaagttatactccctattgggatgaagcatggttagaaagtgggaagatgcttg 336  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42806695 tattataaaaggataaaaaatgtgtacctctcataccaggatgcttaaagttatactccctattgggaagaagcatggttagaaagtgggaagatgcttg 42806596  T
Q  337 ctcccatacctatatcattgataatttgaataaagccagagcaagggaggttat 390  Q
    |||||| |||||||||   |||||||||||||||||||||||||||||||||||    
T  42806595 ctcccagacctatatc---gataatttgaataaagccagagcaagggaggttat 42806545  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 42806926 - 42806868
Alignment:
Q  7 cagacagagacaatagaaaagtcatcaaaagatgcaaacatgattcaatcataatcagg 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42806926 cagacagagacaatagaaaagtcatcaaaagatgcaaacatgattcaatcataatcagg 42806868  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 42764172 - 42764112
Alignment:
Q  5 accagacagagacaatagaaaagtcatcaaaagatgcaaacatgattcaatcataatcagg 65  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42764172 accagacagagacaatagaaaagtcatcaaaagatgcacacatgattcaatcataatcagg 42764112  T

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Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 137 - 390
Target Start/End: Complemental strand, 33050014 - 33049764
Alignment:
Q  137 ggtgtgtgtgcttgtacataacaatttcattgatacaattttagtgtttattaagtgtggggcaaaatttctttccataatgtcttacaacaaaagacaa 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33050014 ggtgtgtgtgcttgtacataacaatttcattgatacaattttagtgtttattacgtgtggggcaaaatttctttccataatgtcttacaacaaaagacaa 33049915  T
Q  237 tattataaaaggataaaaaatgtgtacctcgcataccaggatgcttaaagttatactccctattgggatgaagcatggttagaaagtgggaagatgcttg 336  Q
    || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33049914 taatataaaaggataaaaaatgtgtacctcacataccaggatgcttaaagttatactccctattgggaagaagcatggttagaaagtgggaagatgcttg 33049815  T
Q  337 ctcccatacctatatcattgataatttgaataaagccagagcaagggaggttat 390  Q
    |||||| |||||||||   |||||||||||||||||||||||||||||||||||    
T  33049814 ctcccagacctatatc---gataatttgaataaagccagagcaagggaggttat 33049764  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 33050144 - 33050086
Alignment:
Q  7 cagacagagacaatagaaaagtcatcaaaagatgcaaacatgattcaatcataatcagg 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33050144 cagacagagacaatagaaaagtcatcaaaagatgcaaacatgattcaatcataatcagg 33050086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 390
Target Start/End: Original strand, 26429814 - 26429907
Alignment:
Q  297 tattgggatgaagcatggttagaaagtgggaagatgcttgctcccatacctatatcattgataatttgaataaagccagagcaagggaggttat 390  Q
    |||||||| ||| ||| ||||||||||||| | || |||||||| |   ||||| ||||| ||||||||||||||||||| ||| |||| ||||    
T  26429814 tattgggaagaaccatagttagaaagtggggatatacttgctccaagggctataccattgttaatttgaataaagccagaacaaaggagattat 26429907  T

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