View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16681_low_5 (Length: 375)

Name: NF16681_low_5
Description: NF16681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16681_low_5
NF16681_low_5
[»] chr1 (1 HSPs)
chr1 (1-375)||(4256685-4257059)


Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 4256685 - 4257059
Alignment:
Q  1 atcaatcatcgttgatgaattaagcaaatcaaaatacatcaaggtgaaacattatgccaaatagaaaatttgttaggagcattgcgatgcagaatgtcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4256685 atcaatcatcgttgatgaattaagcaaatcaaaatacatcaaggtgaaacattatgccaaatagaaaatttgttaggagcattgcgatgcagaatgtcaa 4256784  T
Q  101 attacaaacataatggcatatgctttttcaaagaagtttgaagtgttgagatcataacttaaagagttatgatgtctttttgatggttgtgtgtttctta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4256785 attacaaacataatggcatatgctttttcaaagaagtttgaagtgttgagatcataacttaaagagttatgatgtctttttgatggttgtgtgtttctta 4256884  T
Q  201 atttggctctgaaaaatgaataaaattacactatttgttctcctctgacctcacttttgctttaaaaatcggttgctctatttatttttcgaataggtat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4256885 atttggctctgaaaaatgaataaaattacactatttgttctcctctgacctcacttttgctttaaaaatcggttgctctatttatttttcgaataggtat 4256984  T
Q  301 aaacacgatggacaagacgtcactcattaattttgcaaggtcttacttgaagaataagaggtatgtggtttactt 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4256985 aaacacgatggacaagacgtcactcattaattttgcaaggtcttacttgaagaataagaggtatgtggtttactt 4257059  T

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