View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16682_high_1 (Length: 850)
Name: NF16682_high_1
Description: NF16682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16682_high_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 778; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 778; E-Value: 0
Query Start/End: Original strand, 10 - 835
Target Start/End: Complemental strand, 38801310 - 38800485
Alignment:
| Q |
10 |
agtgagatgaagactgtaaaacattcatggtatgttaagacaaaaacatgtgaactgtggaaaattaaccaactgcttcaatgcattttagttgtttatc |
109 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38801310 |
agtgacatgaagactgtaaaacattcatggtatgttaagacaaaaacatgtgaactgtggaaaattaaccaactgcttcaatgcattttagttgtttatc |
38801211 |
T |
|
| Q |
110 |
attcaaacaatcaaacttacctgctgtagtaaaactggcggatttcgagaatatcctttagttgagcaaagaatcgcaggaagcaaaacatccaatagaa |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38801210 |
gttcaaacaatcaaacttacctgctgtagtaaaactggcggatttcgagaatatcctttagttgagcaaagaatcgcaggaagcaaaacatccaatagaa |
38801111 |
T |
|
| Q |
210 |
ggaaaaaattcccaagtatccaacaataatagctttggtaagtgtgagtggggttaaagggtgttgattaagagcttctttgccaagatcacagggctta |
309 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38801110 |
ggaaaaaattcccaagtatccaacaataatagctttggtaagtgtgagtggggttaaagggtgttgattaagagcttctttgccaagatcacagggctta |
38801011 |
T |
|
| Q |
310 |
attccagattcaacagcatccatcccacattttgcattacggagcctattccaatcaacaaataatnnnnnnnntcctgaaaagcatatggtgaacccca |
409 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38801010 |
attccagattcaacagcatccatcccacattttgcattacggagcccattccaatcaacaaataataaaaaaaatcctgaaaagcatatggtgaacccca |
38800911 |
T |
|
| Q |
410 |
gacttagaagttcaacaatccactttgtaacaatacaccataaccctttctcacagtagtagccataaagtctttcaaagaagagatccaaatcagcaat |
509 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38800910 |
gacttagaagttcaacaatccactttgtaacaatacaccataaccctttctcacagtagtagccataaagtctttcaaagaagagatccaaatcagcaat |
38800811 |
T |
|
| Q |
510 |
tggttctatatatacactttctccattgaggaaatcggaagggctctcacttcctggacttgggatccttccgtaattagacaattcgatctccggcgaa |
609 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38800810 |
tggttctacatatacactttctccattgaggaaatcggaagggctctcacttcctggacttgggatccttccgtaattagacaattcgatctccggcgaa |
38800711 |
T |
|
| Q |
610 |
tcatcatgaagtaaacctcttgtcaaagatgacgcacctttctgtttccatttgaatatactaaaagcgccagaaccacttggtctgctaaacattgttc |
709 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38800710 |
tcatcatgaagtaaacctcttgtcaaagatgacgcacctttctgtttccatttgaatatactaaaagcgccagaaccacttggtctgctaaacattgttc |
38800611 |
T |
|
| Q |
710 |
acagacactaatagtaggtgtaaacagccagtccattccccaaagaccaaaacggttataacaaggttctacaatcgttaccatattaatattagaatct |
809 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
38800610 |
acagacactaatagtaggtgtaaacagccagtccattccccaaagaccaaaacggttataacaagggtctacaaacgttaccatattaatattagaatct |
38800511 |
T |
|
| Q |
810 |
tacaaaaggcaaacaatcaaacagat |
835 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
38800510 |
tacaaaaggcaaacaatcaaacagat |
38800485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 160; Significance: 8e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 8e-85
Query Start/End: Original strand, 163 - 782
Target Start/End: Original strand, 30835505 - 30836124
Alignment:
| Q |
163 |
tcctttagttgagcaaagaatcgcaggaagcaaaacatccaatagaaggaaaaaattcccaagtatccaacaataatagctttggtaagtgtgagtgggg |
262 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||| |||||||||| ||||| ||||| |||||||||||||||||||||||| ||||||| | |||| |
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| T |
30835505 |
tcctttagttgagcaaagaatcttaagaagcaaaatatccaatagatagaaaatattcctaagtatccaacaataatagctttgctaagtgttaacgggg |
30835604 |
T |
|
| Q |
263 |
ttaaagggtgttgattaagagcttctttgccaagatcacagggcttaattccagattcaacagcatccatcccacattttgcattacggagcctattcca |
362 |
Q |
| |
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||||||||||||||| |||||||||||| | |||||||||||||| || || ||||| |||||||||||||||||||| ||||||||||| | |||||| |
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|
| T |
30835605 |
ttaaagggtgttgatgaagagcttctttagcgagatcacagggcttcatcccggattccacagcatccatcccacatttagcattacggagtccattcca |
30835704 |
T |
|
| Q |
363 |
atcaacaaataatnnnnnnnntcctgaaaagcatatggtgaaccccagacttagaagttcaacaatccactttgtaacaatacaccataaccctttctca |
462 |
Q |
| |
|
||||||| | | | | | ||||| ||||| ||||| || ||||| |||||||| |||||||||||| | | || ||||||| |||||||||| |
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| T |
30835705 |
atcaacataaagtaaaaaaaatgccgaaaaacatatagtgaatccgagactcagaagttcgacaatccactttatgatgatgcaccatagccctttctca |
30835804 |
T |
|
| Q |
463 |
cagtagtagccataaagtctttcaaagaagagatccaaatcagcaattggttctatatatacactttctccattgaggaaatcggaagggctctcacttc |
562 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||| ||| ||||||| || |||| || || ||||| || | | ||||||||||| |||| |
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| T |
30835805 |
cagtagtagctgtaaagtctttcgaagaagagatccaagtcaccaattggctcgatattagggctatcaccattaagtagccctgaagggctctcgcttc |
30835904 |
T |
|
| Q |
563 |
ctggacttgggatccttccgtaattagacaattcgatctccggcgaatcatcatgaagtaaacctcttgtcaaagatgacgcacctttctgtttccattt |
662 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| ||| ||||| || | | |||| |||| || || | |||| || || |||||| |||||||||| |
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| T |
30835905 |
ctggacttgggatccttctgtaatcagacagttcaatctctggaggaacatcctgaattagactttccgtcaccgacgattcaccttgacgtttccattt |
30836004 |
T |
|
| Q |
663 |
gaatatactaaaagcgccagaaccacttggtctgctaaacattgttcacagacactaatagtaggtgtaaacagccagtccattccccaaagaccaaaac |
762 |
Q |
| |
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|||||||| |||||| | || | |||| ||| ||||||||||||||||| ||| | | | || |||||||||||||||| ||||| ||||| ||| |
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| T |
30836005 |
gaatataccaaaagcactagcatttcttgacctggtaaacattgttcacagatactgaaaattggcataaacagccagtccatgccccagagacccaaat |
30836104 |
T |
|
| Q |
763 |
ggttataacaaggttctaca |
782 |
Q |
| |
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| ||| || |||||||||| |
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|
| T |
30836105 |
agctatgaccaggttctaca |
30836124 |
T |
|
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