View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16682_high_15 (Length: 258)
Name: NF16682_high_15
Description: NF16682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16682_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 36388563 - 36388329
Alignment:
| Q |
8 |
gagatgaaacaacataaattactaaagaagaataccaatgtgaaaagcaaaacaaccaataaccacatggttactatctctaaagatgactctaatagac |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36388563 |
gagaagaaacaacataaattactaaagaagaataccaatgtaaaaagcaaaacaaccaataaccacatggttactatctctaaagatgactctaatagac |
36388464 |
T |
|
| Q |
108 |
gcatgaccagggctttgttgcaccatcactattacatttgatccgatcacaaattggaggcttccgcaatacatggatgatgcaatgagccttaggatac |
207 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36388463 |
gcatgaccagggctttgtttcaccatcactattacatttgatccgatcacaaattggaggcttccgcaatacatggatgatgcaatgagccttaggatac |
36388364 |
T |
|
| Q |
208 |
ttctccaaaattttaatgagtttgaaagcttcttt |
242 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
36388363 |
ttctccaaaattttaatgagtttgaaagcttcttt |
36388329 |
T |
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