View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16682_high_19 (Length: 227)
Name: NF16682_high_19
Description: NF16682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16682_high_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 21275577 - 21275771
Alignment:
| Q |
19 |
cgtatgattgctgattggacgttagtatgcttgattcatccaccagctttaacatatgaaaa--aattagagacaaatcttgcaaatccaagttttttga |
116 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
21275577 |
cgtatgattgctgattggacgttagcatgcttgattcatccatcacctttaacatatgaaaaaaaattagagacaaatcttgcaaatccaagttttttga |
21275676 |
T |
|
| Q |
117 |
ttccgccttcttctaccgtttaattgattttcttgctatattacattgatcatttgcttgatcacaattcaatttttcaacaaccagcgcttcat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21275677 |
ttccgccttcttctaccgtttaattgattttcttgctatattacattgatcatttgcttgatcacaattcaatttttcaacaaccagcgcttcat |
21275771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 7463049 - 7463097
Alignment:
| Q |
145 |
tttcttgctatattacattgatcatttgcttgatcacaattcaattttt |
193 |
Q |
| |
|
|||||||||| ||||||||| | ||||||||||||||||||| |||||| |
|
|
| T |
7463049 |
tttcttgctacattacattggtaatttgcttgatcacaattccattttt |
7463097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 49835812 - 49835740
Alignment:
| Q |
42 |
agtatgcttgattcatccaccagctttaacatatgaaaaaattagagacaaatcttgcaaatccaagtttttt |
114 |
Q |
| |
|
|||||||||| |||||||| || |||||||||||||| || | |||||| |||||||||||| ||||||| |
|
|
| T |
49835812 |
agtatgcttgcttcatccatcacttttaacatatgaaagaaacaaggacaaaacttgcaaatccatgtttttt |
49835740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University