View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16682_high_8 (Length: 364)
Name: NF16682_high_8
Description: NF16682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16682_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 38424522 - 38424175
Alignment:
| Q |
1 |
atgaaggagaatccacaccctatctgcctaaaacaaaaggaaggctatactactcattcatgcaaggaacatggttacatgagaaatcatataagacttt |
100 |
Q |
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| T |
38424522 |
atgaaggagaatccacaccctatctgcctaaaacaaaaggaaggctatactactcattcatgcaaggaacatggttacatgagaaatcatataagacttt |
38424423 |
T |
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| Q |
101 |
ctgaagaaccattttctggagcagaactaaactttatcctccaaaagaggcgaacactgaaaacaaacgaaaaagatttggtggcatggcaggttgccac |
200 |
Q |
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| T |
38424422 |
ctgaagaaccattttctggagcagaactaaactttatcctccaaaagaggcgaacactgaaaacaaacgaaaaagatttggtggcatggcaggttgccac |
38424323 |
T |
|
| Q |
201 |
cctataaccccgtaaaaatattataagacccttgaagagaaaactcacaagtaacagactcctgcaagataactcaaacgattcgtattacgttacgtac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38424322 |
cctataaccccgtaaaaatattataagacccttgaagagaaaactcacaagtaacagactcctgcaagataactcaaacgattcgtattacgttacgtac |
38424223 |
T |
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| Q |
301 |
gtgaagaaatataatgagttcggagagaggtggtttaagctcaacttt |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38424222 |
gtgaagaaatataatgagttcggagagaggtggtttaagctcaacttt |
38424175 |
T |
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