View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16682_low_10 (Length: 353)
Name: NF16682_low_10
Description: NF16682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16682_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 4489595 - 4489267
Alignment:
| Q |
1 |
tccaaatttccatctgttagattactctcatctgcatatcacagtttcaaaagtcaatagcttgaagttatatatgtaaaatatatatcaaggtttaaaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4489595 |
tccaaatttccatctgttagattactctcatctgcatatcacaatttcaaaagtcaatagcttgaagttatatatataaaatatatatcaaggtttaaaa |
4489496 |
T |
|
| Q |
101 |
tcgcatttgcaataatgattgtggtttgtagtttcatcatactgtcattacttataatcgtaaccaatgcggttgatgaaacctcaaatttaatgcaatt |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4489495 |
tcgcctttgcaataatgattgtggtttgtagtttcatcatactgtcattgcttataatcgt-------gcggttgatgaaacctcaaatttaatgcaatt |
4489403 |
T |
|
| Q |
201 |
agcaagacatcaaaacggttgtgttcggcccatattgcgctcacaatccnnnnnnngaaaaaccttgatgcagacatacatgtacacacacaacatacct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4489402 |
agcaagacatcaaaacggttgtgttcggcccatattgcgctcacaatcctttttgtgaaaaaccttgatgcagacatacatgtacacacacaacatacct |
4489303 |
T |
|
| Q |
301 |
cccttaggatgaaaaagggaacataatgattacctt |
336 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
4489302 |
cccttaggatgaaaaagggaacataatgattacctt |
4489267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 4481591 - 4481824
Alignment:
| Q |
1 |
tccaaatttccatctgttagattactctcatctgcatatcacagtttcaaaagtcaatagcttgaagttatatatgtaaaatatatatcaaggtttaaaa |
100 |
Q |
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||||||| ||||||||||| || |||||||||||||||||||| | ||||| ||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
4481591 |
tccaaatatccatctgttaaataactctcatctgcatatcacaatcacaaaattcaatagcttgaagttatatatgtagaagatatatcaaggtttaaaa |
4481690 |
T |
|
| Q |
101 |
tcgc----atttgcaataatgattgtggtttgtagtttcatcatactgtcattacttataatcgtaacc-aatgcggttgatgaaacctcaaatttaatg |
195 |
Q |
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|| | |||||||| ||||||||||||| |||||||||||||||||| || | |||||||| |||| ||||||||||||| ||||||||| | | || |
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| T |
4481691 |
tcacattaatttgcaacaatgattgtggttaatagtttcatcatactgtctttgcatataatcgcaaccaaatgcggttgatgcaacctcaaa-taagtg |
4481789 |
T |
|
| Q |
196 |
caattagcaagacatcaaaacggttgtgttcggcc |
230 |
Q |
| |
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|||||| ||||||||| |||| || | ||||||| |
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| T |
4481790 |
caattacaaagacatcacaacgtttatcttcggcc |
4481824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 4503703 - 4503458
Alignment:
| Q |
1 |
tccaaatttccatctgttagattactctcatctgcatatcacagtttcaaaagtcaatagcttgaagttatatatgtaaaatatatatcaaggtttaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||| |||| || ||||| |||||||||||||| ||||||||||||| |||||| ||||||||||| |
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|
| T |
4503703 |
tccaaatttccatctgttagataactctcatctgtataacacaattgcaaaactcaatagcttgaagatatatatgtaaaagatatatgaaggtttaaaa |
4503604 |
T |
|
| Q |
101 |
tcgcatttgcaataatgattgtg--------gtttgtagtttcatcatactgtcattacttataatcg-taaccaatgcggttgatgaaacctcaaattt |
191 |
Q |
| |
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|| |||||||||||||||||||| ||| |||||||||||||||| ||| | |||||| | ||||||||||||||| ||||||||| || |
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| T |
4503603 |
tcacatttgcaataatgattgtgaacttgttgttaatagtttcatcatactgatattgcatataattgccgcccaatgcggttgatgcaacctcaaactt |
4503504 |
T |
|
| Q |
192 |
aatgcaattagcaagacatcaaaacggttgtgttcggcccatattg |
237 |
Q |
| |
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|||||||||| |||||||||| |||| | | ||||||||| ||||| |
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| T |
4503503 |
aatgcaattaccaagacatcacaacgttggggttcggcccgtattg |
4503458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 4462024 - 4462141
Alignment:
| Q |
4 |
aaatttccatctgttagattactctcatctgcatatcacagtttcaaaagtcaatagcttgaagttatatatgtaaaatatatatcaaggtttaaaatcg |
103 |
Q |
| |
|
|||| |||||||||||||| | |||||||||||||||| | || |||||||||||||||||||||||||| | |||||||||||||||| ||||||| |
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| T |
4462024 |
aaatatccatctgttagataaatctcatctgcatatcataattaaaaaagtcaatagcttgaagttatatacat-aaatatatatcaaggtataaaatca |
4462122 |
T |
|
| Q |
104 |
catttgcaataatgattgt |
122 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
4462123 |
catttgcaataatgattgt |
4462141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 4470704 - 4470841
Alignment:
| Q |
4 |
aaatttccatctgttagattactctcatctgcatatcacagtttcaaaagtcaatagcttgaagttatatatgtaaaatatatatcaaggtttaaaatcg |
103 |
Q |
| |
|
|||| ||||||| |||||| |||||||||||||||||| | || ||||||||||||| |||||||||||| | ||||||||| |||||||||||||| |
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| T |
4470704 |
aaatatccatctattagataactctcatctgcatatcataattgaaaaagtcaatagc-tgaagttatatacat-aaatatataccaaggtttaaaatca |
4470801 |
T |
|
| Q |
104 |
ca--tttgcaataatgattgtggtttgtagtttcatcata |
141 |
Q |
| |
|
|| |||||||| |||||||| ||| | ||||||||||| |
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| T |
4470802 |
catttttgcaattatgattgtagttaattgtttcatcata |
4470841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 4575206 - 4575329
Alignment:
| Q |
1 |
tccaaatttccatctgttagattactctcatctgcatatcacagtttcaaaagtcaatagcttgaagttatatatgtaaa-atatatatcaaggtttaaa |
99 |
Q |
| |
|
||||||| | ||| |||||||| |||||||||||||| ||| | || ||||| |||||||| |||| |||| | |||| ||||||||||||||||||| |
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| T |
4575206 |
tccaaatattcatttgttagatcactctcatctgcatgtcataattgcaaaaatcaatagc---aagtcatatgtataaatatatatatcaaggtttaaa |
4575302 |
T |
|
| Q |
100 |
atcgcatttgcaataatgattgtggtt |
126 |
Q |
| |
|
||| ||||||||||||| ||| ||||| |
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| T |
4575303 |
atcacatttgcaataataattttggtt |
4575329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 4561416 - 4561516
Alignment:
| Q |
15 |
tgttagattactctcatctgcatatcacagtttcaaaagtcaatagcttgaagttatatatgtaaaatatatatcaaggtttaaaatcgcatttgcaata |
114 |
Q |
| |
|
|||||||| |||||||||||||| ||| | || ||||| |||||||||| |||| |||| | | |||||||||||| ||||||||||| |||| ||||| |
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|
| T |
4561416 |
tgttagatcactctcatctgcatgtcataattgcaaaaatcaatagcttaaagtcatatgtat-aaatatatatcatggtttaaaatcacattaacaata |
4561514 |
T |
|
| Q |
115 |
at |
116 |
Q |
| |
|
|| |
|
|
| T |
4561515 |
at |
4561516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 4506755 - 4506808
Alignment:
| Q |
1 |
tccaaatttccatctgttagattactctcatctgcatatcacagtttcaaaagt |
54 |
Q |
| |
|
||||||| ||||| |||||||| |||||||||||||||||| | || ||||||| |
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|
| T |
4506755 |
tccaaatatccatttgttagataactctcatctgcatatcataattacaaaagt |
4506808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 4593132 - 4593172
Alignment:
| Q |
1 |
tccaaatttccatctgttagattactctcatctgcatatca |
41 |
Q |
| |
|
||||||| ||||| |||||||| |||||||||||||||||| |
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|
| T |
4593132 |
tccaaatatccatttgttagataactctcatctgcatatca |
4593172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 20863077 - 20863013
Alignment:
| Q |
1 |
tccaaatttccatctgttagattactctcatctgcatatcacagtttcaaaagtcaatagcttga |
65 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||||| |||||| | | ||||||||| |||||||| |
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|
| T |
20863077 |
tccaaatatccatttgttagataactctcatctgtatatcataactccaaaagtcagtagcttga |
20863013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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