View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16682_low_11 (Length: 328)

Name: NF16682_low_11
Description: NF16682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16682_low_11
NF16682_low_11
[»] chr4 (14 HSPs)
chr4 (107-310)||(5172649-5172852)
chr4 (107-310)||(4842673-4842876)
chr4 (107-304)||(5195381-5195578)
chr4 (109-310)||(5159729-5159934)
chr4 (107-304)||(5181983-5182184)
chr4 (1-114)||(5159986-5160099)
chr4 (1-114)||(5195628-5195741)
chr4 (107-249)||(5213602-5213744)
chr4 (1-111)||(5172905-5173015)
chr4 (1-111)||(4842510-4842620)
chr4 (1-114)||(5182234-5182344)
chr4 (1-114)||(4856987-4857097)
chr4 (37-114)||(5213794-5213871)
chr4 (1-111)||(5202773-5202880)


Alignment Details
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 107 - 310
Target Start/End: Complemental strand, 5172852 - 5172649
Alignment:
Q  107 aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagcaccaaacatgttatagttgat 206  Q
    ||||||||||||| | ||||| |||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | | ||||    
T  5172852 aatttccactgaatagattatggctaaggtcaagaattctgaggtttgttaagttacttaaacactcaggaagtttagccccaaacatgtttttgctgat 5172753  T
Q  207 atctagttcttccaaatccttcaaattgcataatcctgtcataattaactatgtcctgtcatctttacaaaaattgacattatcataaaaatcttaaagt 306  Q
    ||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  5172752 atccagttctaccaaatccttcaaattgcatagtcctgtcataattaactatgtccagttatctttacaaaaattgacattatcataaaaatcttaaagt 5172653  T
Q  307 tttt 310  Q
    ||||    
T  5172652 tttt 5172649  T

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Target: chr4; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 107 - 310
Target Start/End: Original strand, 4842673 - 4842876
Alignment:
Q  107 aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagcaccaaacatgttatagttgat 206  Q
    ||||||||| ||||| ||||| |||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | | ||||    
T  4842673 aatttccaccgaacagattatggctaaggtcaagaattctgaggtttgttaagttacttaaacactcaggaagtttagccccaaacatgtttttgctgat 4842772  T
Q  207 atctagttcttccaaatccttcaaattgcataatcctgtcataattaactatgtcctgtcatctttacaaaaattgacattatcataaaaatcttaaagt 306  Q
    ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||  ||||||| ||||||||||||||||||||||||    
T  4842773 atccagttcttccaaatccttcaaattgcatagtcctgtcataattaactatgtccggtcatctttcaaaaaattaacattatcataaaaatcttaaagt 4842872  T
Q  307 tttt 310  Q
    ||||    
T  4842873 tttt 4842876  T

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Target: chr4; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 107 - 304
Target Start/End: Complemental strand, 5195578 - 5195381
Alignment:
Q  107 aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagcaccaaacatgttatagttgat 206  Q
    ||||||||||||||| |||||  ||||| ||||||| ||||||||||||||||||||||||||| || ||||||||||||| ||||||||| | | ||||    
T  5195578 aatttccactgaacagattattactaagttcaagaactctgaggtttgttaagttgcttaaacaatctggaagtttagcactaaacatgtttttgctgat 5195479  T
Q  207 atctagttcttccaaatccttcaaattgcataatcctgtcataattaactatgtcctgtcatctttacaaaaattgacattatcataaaaatcttaaa 304  Q
    ||| |||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5195478 atccagttctaccaaatccttaaaattgcatagtcctgtcataattaactatgtcctgtcatctttacaaaaattgacattatcataaaaatcttaaa 5195381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 109 - 310
Target Start/End: Complemental strand, 5159934 - 5159729
Alignment:
Q  109 tttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagcaccaaacatgttatagttgatat 208  Q
    ||||||||||||| |||||  ||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| | | ||||||    
T  5159934 tttccactgaacagattattactaagttcaagaactctgaggtttgttaagttgcttaaacactcaggaaatttagcactaaacatgttctggctgatat 5159835  T
Q  209 ctagttcttccaaatccttcaaattgcataatcctgtcataa----ttaactatgtcctgtcatctttacaaaaattgacattatcataaaaatcttaaa 304  Q
    | |||||| ||||||||||||||||||||| |||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5159834 ccagttctaccaaatccttcaaattgcatagtcctgtcataattaattaactatgtcctgtcatctttacaaaaattgacattatcataaaaatcttaaa 5159735  T
Q  305 gttttt 310  Q
    ||||||    
T  5159734 gttttt 5159729  T

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Target: chr4; HSP #5
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 107 - 304
Target Start/End: Complemental strand, 5182184 - 5181983
Alignment:
Q  107 aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagcaccaaacatgttatagttgat 206  Q
    ||||||||||||||| |||||  ||||| ||||||| ||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||    
T  5182184 aatttccactgaacagattattactaagttcaagaactctaaggtttgttaagttgcttaaacactctggaagtttagcactaaacatgttatagctgat 5182085  T
Q  207 atctagttcttccaaatccttcaaattgcataatcctgtcataa----ttaactatgtcctgtcatctttacaaaaattgacattatcataaaaatctta 302  Q
    ||| | |||| ||||||||||||||||||||| |||||||||||    |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5182084 atccaattctaccaaatccttcaaattgcatagtcctgtcataattaattaactatgtcctgtcatctatacaaaaattgacattatcataaaaatctta 5181985  T
Q  303 aa 304  Q
    ||    
T  5181984 aa 5181983  T

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Target: chr4; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 5160099 - 5159986
Alignment:
Q  1 ttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatgatcctt 100  Q
    |||||||||||||||| ||||||| |  ||||||| ||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||    
T  5160099 ttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagccaaagtgctcaatgaaaatgatcctt 5160000  T
Q  101 gcatgtaatttcca 114  Q
    ||||||||||||||    
T  5159999 gcatgtaatttcca 5159986  T

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Target: chr4; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 5195741 - 5195628
Alignment:
Q  1 ttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatgatcctt 100  Q
    |||||||||||||||| ||||||| |  ||||||| ||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||    
T  5195741 ttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagccaaagtgctcaatgaaaatgatcctt 5195642  T
Q  101 gcatgtaatttcca 114  Q
    ||||||||||||||    
T  5195641 gcatgtaatttcca 5195628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 107 - 249
Target Start/End: Complemental strand, 5213744 - 5213602
Alignment:
Q  107 aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagcaccaaacatgttatagttgat 206  Q
    ||||||||||||||||||||| |||||| |||||||   | |||||||||||||||||||||||||| |||||||  || | ||||||||||||| ||||    
T  5213744 aatttccactgaacaaattatagctaagttcaagaacattcaggtttgttaagttgcttaaacactcgggaagttgcgcgctaaacatgttatagctgat 5213645  T
Q  207 atctagttcttccaaatccttcaaattgcataatcctgtcata 249  Q
    |||||| ||| ||||||||||||| ||||||| ||||||||||    
T  5213644 atctagctctaccaaatccttcaatttgcatagtcctgtcata 5213602  T

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Target: chr4; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 5173015 - 5172905
Alignment:
Q  1 ttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatgatcctt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||  | |||||||| | |||||||||||| || | | ||||||||||||||    
T  5173015 ttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatgtagatgctgaagattggagtgattagccaaaatgataagtgaaaatgatcctt 5172916  T
Q  101 gcatgtaattt 111  Q
    |||||||||||    
T  5172915 gcatgtaattt 5172905  T

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Target: chr4; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 4842510 - 4842620
Alignment:
Q  1 ttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatgatcctt 100  Q
    |||||||||||||||||||||||| | |||||||| |||||||||||||||  | |||||||| | |||||||||||| || | | ||||||||||||||    
T  4842510 ttttcagtttcaatgtgtactccaatactgtttttagatgaaatatatagatgctgaagattggagtgattagccaaattgataagtgaaaatgatcctt 4842609  T
Q  101 gcatgtaattt 111  Q
    |||||||||||    
T  4842610 gcatgtaattt 4842620  T

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Target: chr4; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 5182344 - 5182234
Alignment:
Q  1 ttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatgatcctt 100  Q
    ||||||||||||||| | ||||||   ||||||| || |||||||||||||  | |||||||  | ||||||||||||||||||||||||||||||||||    
T  5182344 ttttcagtttcaatgagaactcca---ctgttttccggtgaaatatatagatgctgaagatttgagtgattagccaaagtgctcaatgaaaatgatcctt 5182248  T
Q  101 gcatgtaatttcca 114  Q
    ||||||||||||||    
T  5182247 gcatgtaatttcca 5182234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 4856987 - 4857097
Alignment:
Q  1 ttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatgatcctt 100  Q
    ||||||||||||||| | ||||||   ||||||| || |||||||||||||  | |||||||  | ||||||||||||||| ||||||||||||||||||    
T  4856987 ttttcagtttcaatgagaactcca---ctgttttccggtgaaatatatagatgctgaagatttgagtgattagccaaagtggtcaatgaaaatgatcctt 4857083  T
Q  101 gcatgtaatttcca 114  Q
    ||||||||||||||    
T  4857084 gcatgtaatttcca 4857097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 5213871 - 5213794
Alignment:
Q  37 gatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatgatccttgcatgtaatttcca 114  Q
    |||||||||||||||  | | |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5213871 gatgaaatatatagatgctggagattggagtgattagccaaagtgctcaatgaaaatgatccttgcatgtaatttcca 5213794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 5202880 - 5202773
Alignment:
Q  1 ttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatgatcctt 100  Q
    |||| ||||||||||||| ||||| |||| | |   || |||||||||||| || ||||  |||| ||||||||||||||||| | |||||||| |||||    
T  5202880 ttttaagtttcaatgtgttctccaatgctttct---gaggaaatatatagatcctgaagcgtgaagtgattagccaaagtgcttactgaaaatggtcctt 5202784  T
Q  101 gcatgtaattt 111  Q
    || ||| ||||    
T  5202783 gcgtgtgattt 5202773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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