View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16682_low_14 (Length: 307)
Name: NF16682_low_14
Description: NF16682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16682_low_14 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 27975825 - 27976121
Alignment:
| Q |
1 |
ttttcccaaactaaccctaattcaaaaccctaaaattcttttgtaaaaagatctgatttttatgtgattagtatgtgtttaggtgtttgatttgattcat |
100 |
Q |
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| T |
27975825 |
ttttcccaaactaaccctaattcaaaaccctaaaattcttttgtaaaaagatctgatttttatgtgattagtatgtgtttaggtgtttgatttgattcat |
27975924 |
T |
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| Q |
101 |
tgttgattttttagggtaagaaaagaaaggatacgatttgtattgcacttgctgatgaaacatgtgaagagcctaagataagaatgaataaggttgtgag |
200 |
Q |
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| T |
27975925 |
tgttgattttttagggtaagaaaagaaaggatacgatttgtattgcacttgctgatgaaacatgtgaagagccaaagataagaatgaataaggttgtgag |
27976024 |
T |
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| Q |
201 |
aaacaatcttagggttaggcttggtgatgttgtttctgttcatcaatgtcctgatgtcaaatatggaaagcgagttcatattcttcctgttgatgat |
297 |
Q |
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| T |
27976025 |
aaacaatcttagggttaggcttggtgatgttgtttctgttcatcaatgtcctgatgtcaaatatggaaagcgagttcatattcttcctgttgatgat |
27976121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 109 - 297
Target Start/End: Original strand, 109310 - 109498
Alignment:
| Q |
109 |
ttttagggtaagaaaagaaaggatacgatttgtattgcacttgctgatgaaacatgtgaagagcctaagataagaatgaataaggttgtgagaaacaatc |
208 |
Q |
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| T |
109310 |
ttttagggtaagaaaaggaaagatactatatgtattgcactcgctgatgaaacatgtgaagagccaaaaataagaatgaacaaggttgtgaggaacaatc |
109409 |
T |
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| Q |
209 |
ttagggttaggcttggtgatgttgtttctgttcatcaatgtcctgatgtcaaatatggaaagcgagttcatattcttcctgttgatgat |
297 |
Q |
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| T |
109410 |
ttagggttaggcttggagatgttgtttcggtgcatcaatgtgctgatgtcaaatatggaaagagagttcacattcttcccgtcgatgat |
109498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 109 - 297
Target Start/End: Complemental strand, 41093986 - 41093798
Alignment:
| Q |
109 |
ttttagggtaagaaaagaaaggatacgatttgtattgcacttgctgatgaaacatgtgaagagcctaagataagaatgaataaggttgtgagaaacaatc |
208 |
Q |
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| T |
41093986 |
ttttagggtaagaaaaggaaagatactatatgtattgcactcgctgatgaaacatgtgaagagccaaaaataagaatgaacaaggttgtgaggaacaatc |
41093887 |
T |
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| Q |
209 |
ttagggttaggcttggtgatgttgtttctgttcatcaatgtcctgatgtcaaatatggaaagcgagttcatattcttcctgttgatgat |
297 |
Q |
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| T |
41093886 |
ttagggttaggcttggagatgttgtttcggtgcatcaatgtgctgatgtcaaatatggaaagagagttcacattcttcccgtcgatgat |
41093798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 297
Target Start/End: Original strand, 40665079 - 40665263
Alignment:
| Q |
113 |
agggtaagaaaagaaaggatacgatttgtattgcacttgctgatgaaacatgtgaagagcctaagataagaatgaataaggttgtgagaaacaatcttag |
212 |
Q |
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| T |
40665079 |
agggaaagaaaaggaaggatagtgtttgtattgctcttggtgatgatacctgtgaagagcctaggattaggatgaacaaagttgtgaggtcgaatttgcg |
40665178 |
T |
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| Q |
213 |
ggttaggcttggtgatgttgtttctgttcatcaatgtcctgatgtcaaatatggaaagcgagttcatattcttcctgttgatgat |
297 |
Q |
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| T |
40665179 |
agttcggcttggagatgttgtgtctgtgcatcagtgtactgatgtcaagtatggtaaacgtgtgcacattctgcctattgatgat |
40665263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 297
Target Start/End: Complemental strand, 40725465 - 40725281
Alignment:
| Q |
113 |
agggtaagaaaagaaaggatacgatttgtattgcacttgctgatgaaacatgtgaagagcctaagataagaatgaataaggttgtgagaaacaatcttag |
212 |
Q |
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| T |
40725465 |
agggaaagaaaaggaaggatagtgtttgtattgctcttggtgatgatacctgtgaagagcctaggattaggatgaacaaagttgtgaggtcgaatttgcg |
40725366 |
T |
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| Q |
213 |
ggttaggcttggtgatgttgtttctgttcatcaatgtcctgatgtcaaatatggaaagcgagttcatattcttcctgttgatgat |
297 |
Q |
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| T |
40725365 |
agttcggcttggagatgttgtgtctgtgcatcagtgtactgatgtcaagtatggtaaacgtgtgcacattctgcctattgatgat |
40725281 |
T |
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