View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16682_low_15 (Length: 293)
Name: NF16682_low_15
Description: NF16682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16682_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 12924572 - 12924295
Alignment:
| Q |
1 |
aaacctgatgaaatcctccctttggacaatgctgatcctctgtataagaagcttagggatgagataattgagtatgttttgcaagatctcaaacgcgatg |
100 |
Q |
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| T |
12924572 |
aaaccagatgaaatcctccctttggacaatgctgatcctccgtataagaagcttagggatgagataattgagtatgttttgcaagatctcagacgcgatg |
12924473 |
T |
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| Q |
101 |
cactgccaaaggaggaaattcagatgcagtcgcaacctcaagtggtttcgcggaagaagaaaccatttctgtttctatttgtcatttggttcattgcact |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
12924472 |
cactgccaaaggaggaaattcagatgcaatcgcaacctcaagtggtttcgcggaagaagaaaccatttctgtttctatttgtcattttgttcattgcact |
12924373 |
T |
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| Q |
201 |
attagctattcttttcttcactcctgatgatgattgtagactggtgccaacatgagccatttcactgaggttgatttt |
278 |
Q |
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| T |
12924372 |
attagctattcttttcttcactcctgatgatgattgtagactggtgccaacatgagccatttcactgaggttgatttt |
12924295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 30791116 - 30791364
Alignment:
| Q |
1 |
aaacctgatgaaatcctccctttggacaatgctgatcctctgtataagaagcttagggatgagataattgagtatgttttgcaagatctcaaacgcgatg |
100 |
Q |
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|||||||||||||||||| ||||||| |||||||||||| | ||||||||||||||||||||||| |||| |||||||||||||||||||||| | ||| |
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| T |
30791116 |
aaacctgatgaaatcctcaatttggactatgctgatcctcgg-ataagaagcttagggatgagatagttgaatatgttttgcaagatctcaaacacaatg |
30791214 |
T |
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| Q |
101 |
cactgccaaaggaggaaattcagatgcagtcgcaacctcaagtggtttcgcggaagaagaaaccatttctgtttctatttgtcatttggttcattgcact |
200 |
Q |
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| T |
30791215 |
cactgccagaggagggaattcagacgcgatcgcaacctcaagtgcttttggataagaagaaaccatttttgtttc--tgtgtcatttggttcattgcagc |
30791312 |
T |
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| Q |
201 |
attagctattcttttcttcactcctgatgatgattgtagactggtgccaacatg |
254 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30791313 |
atta--tatgcttttcttcactcctgatgatgattgtagacttgtgccaacatg |
30791364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 22382716 - 22382466
Alignment:
| Q |
9 |
tgaaatcctccctttggacaatgctgatcctctgtataagaagcttagggatgagataattgagtatgttttgcaagatctcaaacgcgatgcactgcca |
108 |
Q |
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||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||| | ||||||| |||||||||||| |||| |||||| |
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| T |
22382716 |
tgaaatcctgactttggacaatgctgatcctcggtataagaagcttagggatgagatggttgaggacattttgcacgatctcaaacgcaatgctctgcca |
22382617 |
T |
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| Q |
109 |
aaggaggaaattcagatgcagtcgcaacctcaa------gtggtttcgcggaagaagaaaccatttctgtttctatttgtcatttggttcattgcactat |
202 |
Q |
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| T |
22382616 |
aaggagggaattcagacgcgattacaacctcaagtgcttgtgcttttggggaagaaaaaagcatttttgtttctctgtgcaattttgttcattgcagtat |
22382517 |
T |
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| Q |
203 |
tagctattcttttcttcactcctgatgatgattgtagactggtgccaacat |
253 |
Q |
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||||||| ||||||| |||| | |||||||||||| | || |||||||||| |
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| T |
22382516 |
tagctatgcttttctacacttccgatgatgattgtcgcctagtgccaacat |
22382466 |
T |
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