View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16682_low_2 (Length: 755)

Name: NF16682_low_2
Description: NF16682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16682_low_2
NF16682_low_2
[»] chr7 (3 HSPs)
chr7 (36-342)||(42029329-42029635)
chr7 (397-740)||(42029690-42030033)
chr7 (577-650)||(10325121-10325194)
[»] chr1 (1 HSPs)
chr1 (570-672)||(51080720-51080822)
[»] chr2 (1 HSPs)
chr2 (570-672)||(40287065-40287167)
[»] chr3 (3 HSPs)
chr3 (577-633)||(38998907-38998963)
chr3 (577-624)||(27265807-27265854)
chr3 (570-622)||(36684916-36684968)
[»] chr6 (2 HSPs)
chr6 (577-624)||(13757556-13757603)
chr6 (577-624)||(19047096-19047143)
[»] chr5 (1 HSPs)
chr5 (570-624)||(14856970-14857024)
[»] chr8 (1 HSPs)
chr8 (580-625)||(14541224-14541269)
[»] chr4 (1 HSPs)
chr4 (581-624)||(2087389-2087432)


Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 36 - 342
Target Start/End: Original strand, 42029329 - 42029635
Alignment:
Q  36 acctacacaccttatcactgatttggtatcttacaatttcatgaacctgatattaagattaaaatttagtttttctttccatccaataattagactttta 135  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  42029329 acctacacaccttatcactgatttggcatcttacaatttcatgaacctgatattaagattaaaatttagtttttctttccatccaattattagactttta 42029428  T
Q  136 agtagtaatttgataaaactaatcaagtgactagattcataatcatatctgctttctcttctttgtaaaaggtgaccagctctagcagtctaggttgcaa 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42029429 agtagtaatttgataaaactaatcaagtgactagattcataatcatatctgctttctcttctttgtaaaaggtgaccagctctagcagtctagattgcaa 42029528  T
Q  236 ctgctgcttgatgagtaggttgaaccccattgcaccttccaacaatcggtgttgaattggtgatggggttagcagctttagcaagtgttggctgaatagt 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42029529 ctgctgcttgatgagtaggttgaaccccattgcaccttccaacaatcggtgttgaattggtgatggggttagcagctttagcaagtgttggctgaatagt 42029628  T
Q  336 tgggccc 342  Q
    |||||||    
T  42029629 tgggccc 42029635  T

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Target: chr7; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 397 - 740
Target Start/End: Original strand, 42029690 - 42030033
Alignment:
Q  397 tttaggttggaattggatggatgaggtgttcatcaatcttttgtctaaaaataaacgatttgannnnnnngttgagggaagcaactcaatgcatttaagt 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  42029690 tttaggttggaattggatggatgaggtgttcatcaatcttttgtctaaaaataaacgatttgacttttttgttgagggaagcaactcaatgcatttaagt 42029789  T
Q  497 gggactagcattatatgggaccaaatacatgaaggaacatcatcataaaaaattatatgggactagctgtatcaattcacgagcgaccccattagtttgc 596  Q
    ||||| ||||||||||||||||||||||||||||| | |||||||| ||| ||||||| |||||| | |||||||||||||||||||||||||| |||||    
T  42029790 gggaccagcattatatgggaccaaatacatgaaggtatatcatcatcaaacattatataggactaaccgtatcaattcacgagcgaccccattaatttgc 42029889  T
Q  597 ctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtctatatgcagaaataatacaaccaaatgagtctacaacattcttaaagt 696  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42029890 ctcatattaaattcaacatgagagtttttgaaactattatggaacatctgtctatatgcagaaataatacaaccaaatgagtctacaacattcttaaagt 42029989  T
Q  697 cgagagcaaaatccaaattataaagttgaaggtctaatgttcat 740  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  42029990 cgagagcaaaatccaaattataaagttgaaggtctaatgttcat 42030033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 577 - 650
Target Start/End: Original strand, 10325121 - 10325194
Alignment:
Q  577 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtcta 650  Q
    |||||||| |||| ||||||||| |||||||||| ||||||||||| || |||| |||||| |||| |||||||    
T  10325121 gagcgacctcattcgtttgcctcctattaaactcgacatgagagttgtttaaacaattaagtaacaattgtcta 10325194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 570 - 672
Target Start/End: Original strand, 51080720 - 51080822
Alignment:
Q  570 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtctatatgcagaaataatacaac 669  Q
    |||||| ||||||||||||||| ||||||| |||||||||| |||||||||||||  |||||||   | ||||  |||||| |||||| |||||||||||    
T  51080720 aattcatgagcgaccccattagattgcctcctattaaactcgacatgagagttttgaaaactatcctgaaacaactgtctacatgcagtaataatacaac 51080819  T
Q  670 caa 672  Q
    |||    
T  51080820 caa 51080822  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 570 - 672
Target Start/End: Original strand, 40287065 - 40287167
Alignment:
Q  570 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtctatatgcagaaataatacaac 669  Q
    |||||| ||| ||||||||||| |||||||||||||||||  |||||||||||||  |||||||   | ||||  |||||| |||||| |||||||||||    
T  40287065 aattcatgagtgaccccattagcttgcctcatattaaacttgacatgagagttttgaaaactatcctgaaacaactgtctacatgcagtaataatacaac 40287164  T
Q  670 caa 672  Q
    |||    
T  40287165 caa 40287167  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 577 - 633
Target Start/End: Complemental strand, 38998963 - 38998907
Alignment:
Q  577 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactat 633  Q
    ||||||||||||||| ||||||| |||||||||| |||||||||||||  |||||||    
T  38998963 gagcgaccccattagcttgcctcctattaaactcgacatgagagttttgaaaactat 38998907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 577 - 624
Target Start/End: Complemental strand, 27265854 - 27265807
Alignment:
Q  577 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttt 624  Q
    |||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  27265854 gagcgacctcattagtttgtctcttattaaactcaacatgagagtttt 27265807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 570 - 622
Target Start/End: Complemental strand, 36684968 - 36684916
Alignment:
Q  570 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 622  Q
    |||||| ||||||||||||||| ||||||| |||| ||||| |||||||||||    
T  36684968 aattcatgagcgaccccattagcttgcctcctattgaactcgacatgagagtt 36684916  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 577 - 624
Target Start/End: Original strand, 13757556 - 13757603
Alignment:
Q  577 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttt 624  Q
    |||||||| ||||||||||| || ||||||||||||||||||||||||    
T  13757556 gagcgacctcattagtttgcttcttattaaactcaacatgagagtttt 13757603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 577 - 624
Target Start/End: Complemental strand, 19047143 - 19047096
Alignment:
Q  577 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttt 624  Q
    |||||||| |||||| ||||||| |||||||||| |||||||||||||    
T  19047143 gagcgaccacattagcttgcctcctattaaactcgacatgagagtttt 19047096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 570 - 624
Target Start/End: Original strand, 14856970 - 14857024
Alignment:
Q  570 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtttt 624  Q
    |||||| |||||| | |||| |||||||||||||||||||| |||||||||||||    
T  14856970 aattcatgagcgatcacatttgtttgcctcatattaaactcgacatgagagtttt 14857024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 580 - 625
Target Start/End: Complemental strand, 14541269 - 14541224
Alignment:
Q  580 cgaccccattagtttgcctcatattaaactcaacatgagagttttt 625  Q
    ||||| ||||||||||||||||||||||||||| | ||||||||||    
T  14541269 cgaccacattagtttgcctcatattaaactcaatacgagagttttt 14541224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 581 - 624
Target Start/End: Original strand, 2087389 - 2087432
Alignment:
Q  581 gaccccattagtttgcctcatattaaactcaacatgagagtttt 624  Q
    ||||||||||||||||||| ||||||| | ||||||||||||||    
T  2087389 gaccccattagtttgcctcgtattaaatttaacatgagagtttt 2087432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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