View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16682_low_3 (Length: 735)
Name: NF16682_low_3
Description: NF16682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16682_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 586; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 1 - 629
Target Start/End: Original strand, 42193009 - 42193635
Alignment:
| Q |
1 |
tatcgaggaagctgaggccctttgtttagaactctgctgccatgttaaaaatagtgtgacaaatagagagactgtgtttttgaatgtgcttgaattgcat |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42193009 |
tatcgaggaagctgaggcccttagtttagaactctgctgccgtgttaaaaatagtg--acaaaaagagagactgtgtttttgaatgtgcttgaattgcat |
42193106 |
T |
|
| Q |
101 |
agcacccaacaacatgcttgcttaatttatacatatatacgttagctataatgataggaaatgagaagtacaatttacaagggagcatttatgctagcac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42193107 |
agcacccaacaacatgcttgcttaatttatacatatatacgttagctataatgataggaaatgagaagtacaatttacaagggagcatttatgctagcac |
42193206 |
T |
|
| Q |
201 |
tgctttctaagatgcattgaacttgttctactttctatacaatggatctaaactatttgggaagtgaagcactaaagatgtctacgaagtgaaacctgaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42193207 |
tgctttctaagatgcattgaacttgttctactttctatacaatggatctaaactatttgggaagtgaagcactaaagatgtctacgaagtgaaacatgaa |
42193306 |
T |
|
| Q |
301 |
tgagttttttgtttccaacacaaacgaagagcactaagtgcttgtttggtttgataaaacaaagctttataattaagcactcaagtttggcagcctagtg |
400 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42193307 |
tgagttttttgtttccaacacaaacaaagagcactaagtgcttgtttggtttgataaaacaaagctttataattaagcactcaagtttggcagcctagtg |
42193406 |
T |
|
| Q |
401 |
ttctgtgatttttcttgtattaaagaaatgagaaagtgttgtcttgatgagttggtggaggagataaaagtgttgtcttggcaatggagcttacaaaggt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42193407 |
ttctgtgatttttcttgtattaaagaaatgagaaagtgttgtcttgatgagttggtggaggagataaaagtgttgtcttggcaatggagcttacaaaggt |
42193506 |
T |
|
| Q |
501 |
tgaaaattctatcgtgtctcttctacgagtggacttggcatcttaagattttccttcttagatagggttgttttgagggttttgctgggcaagtgttcca |
600 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42193507 |
tgaaaattccatcgtgtctcttctatgagtggacttggcatcttaagattttccttcttagatagggttgttttgagggttttgctgggcaagtgttcca |
42193606 |
T |
|
| Q |
601 |
ctggtgcagcagctggtttctgcctgctg |
629 |
Q |
| |
|
|||||||||| |||||||||||||||||| |
|
|
| T |
42193607 |
ctggtgcagccgctggtttctgcctgctg |
42193635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 3e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 3561948 - 3561814
Alignment:
| Q |
1 |
tatcgaggaagctgaggccctttgtttag-aactctgctgccatgttaaaaatagtgtgacaaatagagagactgtgtttttgaatgtgcttgaattgca |
99 |
Q |
| |
|
|||||||||||||||| | ||| | |||| |||||||||||||||||||||||||||||| ||||||||| |||| |||| |||||||||||||||||| |
|
|
| T |
3561948 |
tatcgaggaagctgagtctcttagattaggaactctgctgccatgttaaaaatagtgtgaaaaatagaga--ctgt-ttttcgaatgtgcttgaattgca |
3561852 |
T |
|
| Q |
100 |
tagcacccaacaacatgcttgcttaatttatacatata |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3561851 |
tagcacccaacaacatgcttgcttaatttatacatata |
3561814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 544 - 629
Target Start/End: Complemental strand, 31552751 - 31552667
Alignment:
| Q |
544 |
taagattttccttcttagatagggttgttttgagggttttgctgggcaagtgttccactggtgcagcagctggtttctgcctgctg |
629 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| |||| |||||| ||| |||||| |||||| ||||||||||||||||||||| |
|
|
| T |
31552751 |
taagatttgccttcttagatagggtggtttttaggggtttgcttggc-tgtgttctcctggtgttgcagctggtttctgcctgctg |
31552667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 81 - 321
Target Start/End: Complemental strand, 34175697 - 34175461
Alignment:
| Q |
81 |
tgaatgtgcttgaattgcatagcacccaacaacatgcttgcttaatttatacatatatacgttagctataatgataggaaatgagaagtacaatttacaa |
180 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||||| | || | | ||| |||||| |||||| | || |||||||||| |
|
|
| T |
34175697 |
tgaatgtgcttgaattgcatagcactcaacaacatgcttgcttgatttatatacat----ggcatctacggtgatagtaaatgaaaggtgcaatttacaa |
34175602 |
T |
|
| Q |
181 |
gggagcatttatgctagcactgctttctaagatgcattgaacttgttctactttctatacaatggatctaaactatttgggaagtgaagcactaaagatg |
280 |
Q |
| |
|
|||| |||||| ||||||||| ||| ||||||| ||||||||||||||||||| |||||||||| || ||||||| ||| |||||| ||| |||||| | |
|
|
| T |
34175601 |
gggaacatttaagctagcactacttcctaagatacattgaacttgttctacttgctatacaatgaatttaaactaattgagaagtggggcattaaagagg |
34175502 |
T |
|
| Q |
281 |
tctacg-aagtgaaacctgaatgagttttttgtttccaacac |
321 |
Q |
| |
|
|||| | ||||||||| | | ||||||||||||||||||| |
|
|
| T |
34175501 |
tctaggaaagtgaaacattggt-agttttttgtttccaacac |
34175461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 152 - 320
Target Start/End: Complemental strand, 882394 - 882225
Alignment:
| Q |
152 |
tgataggaaatgagaagtacaatttacaagggagcatttatgctagcactgctttctaagatgcattgaacttgttctactttctatacaatggatctaa |
251 |
Q |
| |
|
|||||| |||||| | |||||||||||||||||||||||| ||||||||| ||| ||||||| ||||||||||||||||||| ||||||||| || | | |
|
|
| T |
882394 |
tgatagtaaatgaaatgtacaatttacaagggagcatttaagctagcactacttcctaagatacattgaacttgttctacttgttatacaatgaatttga |
882295 |
T |
|
| Q |
252 |
actatttgggaagtgaagcactaaagatgtctacg-aagtgaaacctgaatgagttttttgtttccaaca |
320 |
Q |
| |
|
|||||| ||||| | |||| |||||| ||||| | |||| |||| | ||| |||||||||||||||||| |
|
|
| T |
882294 |
actattcgggaatgggagcattaaagaggtctaggaaagtaaaacattaattagttttttgtttccaaca |
882225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 207 - 320
Target Start/End: Complemental strand, 48113864 - 48113750
Alignment:
| Q |
207 |
ctaagatgcattgaacttgttctactttctatacaatggatctaaactatttgggaagtgaagcactaaagatgtctacg-aagtgaaacctgaatgagt |
305 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||| || |||||||||||||||||| |||| |||||| ||| | | ||||||||| | ||| ||| |
|
|
| T |
48113864 |
ctaagatccattgaacttgttctacttgctatacaatgaatttaaactatttgggaagtggagcattaaagaggtccaggaaagtgaaacattaattagt |
48113765 |
T |
|
| Q |
306 |
tttttgtttccaaca |
320 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
48113764 |
tttttgtttccaaca |
48113750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 444 - 530
Target Start/End: Complemental strand, 15472651 - 15472566
Alignment:
| Q |
444 |
ttgatgagttggtggaggagataaaagtgttgtcttggcaatggagcttacaaaggttgaaaattctatcgtgtctcttctacgagt |
530 |
Q |
| |
|
|||||||||| ||||||||||| ||||| ||||||||||| ||||||||| ||| ||||| ||| ||| || |||||| |||||| |
|
|
| T |
15472651 |
ttgatgagttagtggaggagattaaagt-ttgtcttggcattggagcttaacaagattgaagattgcatcttgcctcttcaacgagt |
15472566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 444 - 530
Target Start/End: Original strand, 15510143 - 15510228
Alignment:
| Q |
444 |
ttgatgagttggtggaggagataaaagtgttgtcttggcaatggagcttacaaaggttgaaaattctatcgtgtctcttctacgagt |
530 |
Q |
| |
|
|||||||||| ||||||||||| ||||| ||||||||||| ||||||||| ||| ||||| ||| ||| || |||||| |||||| |
|
|
| T |
15510143 |
ttgatgagttagtggaggagattaaagt-ttgtcttggcattggagcttaacaagattgaagattgcatcttgcctcttcaacgagt |
15510228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 35707623 - 35707576
Alignment:
| Q |
81 |
tgaatgtgcttgaattgcatagcacccaacaacatgcttgcttaattt |
128 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35707623 |
tgaatgtgcttgaattgcatagcactcaacaacatgcttgcttaattt |
35707576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 8171153 - 8171203
Alignment:
| Q |
81 |
tgaatgtgcttgaattgcatagcacccaacaacatgcttgcttaatttata |
131 |
Q |
| |
|
|||||| |||||| |||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
8171153 |
tgaatgcgcttgagttgcttagcacccaataacatgcttgcttaatttata |
8171203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 473 - 538
Target Start/End: Complemental strand, 8170659 - 8170594
Alignment:
| Q |
473 |
ttgtcttggcaatggagcttacaaaggttgaaaattctatcgtgtctcttctacgagtggacttgg |
538 |
Q |
| |
|
|||||||||||||||||||| | |||||||| |||| | | || |||||||||||||||| |||| |
|
|
| T |
8170659 |
ttgtcttggcaatggagcttgaataggttgaagattccaacttgcctcttctacgagtggagttgg |
8170594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University