View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16682_low_5 (Length: 466)

Name: NF16682_low_5
Description: NF16682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16682_low_5
NF16682_low_5
[»] chr2 (13 HSPs)
chr2 (16-263)||(32241460-32241707)
chr2 (27-260)||(22139326-22139561)
chr2 (20-263)||(32294904-32295149)
chr2 (18-263)||(24433821-24434061)
chr2 (325-445)||(32241278-32241398)
chr2 (325-384)||(24433697-24433756)
chr2 (325-384)||(32276349-32276408)
chr2 (191-263)||(32276212-32276287)
chr2 (327-387)||(32295208-32295268)
chr2 (325-387)||(32302881-32302943)
chr2 (325-387)||(22139199-22139261)
chr2 (191-263)||(32302743-32302818)
chr2 (136-169)||(32276180-32276213)
[»] scaffold0786 (2 HSPs)
scaffold0786 (27-260)||(3171-3406)
scaffold0786 (327-387)||(3473-3533)
[»] scaffold0390 (4 HSPs)
scaffold0390 (27-260)||(1703-1938)
scaffold0390 (24-260)||(14684-14922)
scaffold0390 (325-387)||(2003-2065)
scaffold0390 (325-387)||(14987-15049)
[»] scaffold1678 (2 HSPs)
scaffold1678 (20-263)||(1091-1336)
scaffold1678 (325-387)||(967-1029)


Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 263
Target Start/End: Complemental strand, 32241707 - 32241460
Alignment:
Q  16 attgatagtaattatatttatttctccaaattggctatacaaatttgaaagaggctccaaaattttatctaatgcatttgttaagtcaaataaaccaatg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32241707 attgatagtaattatatttatttctccaaattggctatacaaatttgaaagaggctccaaaattttatctaatgcatttgttaagtcaaataaaccaatg 32241608  T
Q  116 gtgaaaaatcaaaatatgagcaagtctttctcattccaaatataacaaactccataattagttaattaccacacacaaacgattggaacaagattattgc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32241607 gtgaaaaatcaaaatatgagcaagtctttctcattccaaatataacaaactccataattagttaattaccacacacaaacgattggaccaagattattgc 32241508  T
Q  216 atgctcctatataagttggtagtatcacattgtttttcatcacaaggg 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32241507 atgctcctatataagttggtagtatcacattgtttttcatcacaaggg 32241460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 27 - 260
Target Start/End: Complemental strand, 22139561 - 22139326
Alignment:
Q  27 ttatatttatttctccaaattggctatacaaatttgaaagaggctccaaaattttatctaatgcatttgttaagtcaaataaaccaatggtgaaaaatca 126  Q
    |||||||||||| ||||||| ||| ||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||| | |||||||    
T  22139561 ttatatttatttttccaaataggcaatacaaatttgaaagaggctccaaagttttatctcattcatttgttaagtcaaataaaccaatggcggaaaatca 22139462  T
Q  127 aaatatgagcaagtctttctcattccaaatataacaaactccataattagttaattaccacacacaaacgattggaacaagattattgcatgctcctata 226  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22139461 aaatatgagcaagtgtttctcattccaaatataacaaactccataattagttaattaccacacacaaacgattggaccaagattattgcatgctcctata 22139362  T
Q  227 taag--ttggtagtatcacattgtttttcatcacaa 260  Q
    ||||  ||||||||||||||||||||||||||||||    
T  22139361 taagtcttggtagtatcacattgtttttcatcacaa 22139326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 20 - 263
Target Start/End: Original strand, 32294904 - 32295149
Alignment:
Q  20 atagtaattatatttatttctccaaattggctatacaaatttgaaagaggctccaaaattttatctaatgcatttgttaagtcaaataaaccaatggtga 119  Q
    ||||||||||||||| | | | ||||| ||| ||||||||| || |||||||||||| |||||||| || ||||||||||||||||||||||||||||      
T  32294904 atagtaattatatttttattttcaaataggcaatacaaattggatagaggctccaaagttttatctcattcatttgttaagtcaaataaaccaatggttg 32295003  T
Q  120 aaaatcaaaatatgagcaagtctttctcattccaaatataacaaactccataattagttaattaccacacacaaacgattggaacaagattattgcatgc 219  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32295004 aaactcaaaatatgagcaagtctttctcattccaaatataacaaaatccataattagttaattaccacacacaaacgattggaccaagattattgcatgc 32295103  T
Q  220 tcctatataag--ttggtagtatcacattgtttttcatcacaaggg 263  Q
    |||||||||||  |||||| |||| |||||||||||||||||||||    
T  32295104 tcctatataagacttggtaatatcccattgtttttcatcacaaggg 32295149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 24434061 - 24433821
Alignment:
Q  18 tgatagtaattatatttatttctccaaattggctatacaaatttgaaagaggctccaaaattttatctaatgcatttgttaagtcaaataaaccaatggt 117  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||    
T  24434061 tgatagtaattatatttatttttccaaataggcaatacaaatttgaaagaggctccgaaattttatctcattcatttgttaagtcaaataaaccattggt 24433962  T
Q  118 gaaaaatcaaaatatgagcaagtctttctcattccaaatataacaaactccataattagttaattaccacacacaaacgattggaacaagattattgcat 217  Q
    | ||||||||||||||||||| ||||||| |||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||     
T  24433961 ggaaaatcaaaatatgagcaaatctttctgattctaaatataaaaaactccataatttgttaattaccacacacaaacgattggaccaagattattgca- 24433863  T
Q  218 gctcctatataag--ttggtagtatcacattgtttttcatcacaaggg 263  Q
          |||||||  |||||||||||||||||||||||||||||||||    
T  24433862 ------atataagtcttggtagtatcacattgtttttcatcacaaggg 24433821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 325 - 445
Target Start/End: Complemental strand, 32241398 - 32241278
Alignment:
Q  325 ggcaagatcatttgctatcgttgctctcattgtttcagctttttgcatctcatctgtcttggcaaataacaaaattaactttccagctactaaaggtgat 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32241398 ggcaagatcatttgctatcgttgctctcattgtttcagctttttgcatctcatctgtcttggcaaataaaaaaattaactttccagctactaaaggtgat 32241299  T
Q  425 tttttcgttgttaatggccag 445  Q
    |||||||||||||||||||||    
T  32241298 tttttcgttgttaatggccag 32241278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 325 - 384
Target Start/End: Complemental strand, 24433756 - 24433697
Alignment:
Q  325 ggcaagatcatttgctatcgttgctctcattgtttcagctttttgcatctcatctgtctt 384  Q
    ||||| |||||||||| |||||||||||||||| |||||||||||| |||||||||||||    
T  24433756 ggcaatatcatttgctgtcgttgctctcattgtctcagctttttgcttctcatctgtctt 24433697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 325 - 384
Target Start/End: Original strand, 32276349 - 32276408
Alignment:
Q  325 ggcaagatcatttgctatcgttgctctcattgtttcagctttttgcatctcatctgtctt 384  Q
    |||||||||||||| | |||||||||||||||| |||||||||||| |||||||||||||    
T  32276349 ggcaagatcatttgttgtcgttgctctcattgtctcagctttttgcttctcatctgtctt 32276408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 191 - 263
Target Start/End: Original strand, 32276212 - 32276287
Alignment:
Q  191 caaacgattggaacaagattattgcatgctcctatataag---ttggtagtatcacattgtttttcatcacaaggg 263  Q
    |||||||||||| ||||  | ||||||||||||||||||    |||||||||||||||||||||||||||||||||    
T  32276212 caaacgattggatcaaggctcttgcatgctcctatataaagacttggtagtatcacattgtttttcatcacaaggg 32276287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 387
Target Start/End: Original strand, 32295208 - 32295268
Alignment:
Q  327 caagatcatttgctatcgttgctctcattgtttcagctttttgcatctcatctgtcttggc 387  Q
    |||| ||||||| | ||||||||||||||||||| ||||||||| ||||||||||||||||    
T  32295208 caaggtcatttgttgtcgttgctctcattgtttctgctttttgcttctcatctgtcttggc 32295268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 325 - 387
Target Start/End: Original strand, 32302881 - 32302943
Alignment:
Q  325 ggcaagatcatttgctatcgttgctctcattgtttcagctttttgcatctcatctgtcttggc 387  Q
    |||||| |||||| || |||||||||||||||| || ||||||||| ||||||||||||||||    
T  32302881 ggcaaggtcattttctgtcgttgctctcattgtctctgctttttgcttctcatctgtcttggc 32302943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 387
Target Start/End: Complemental strand, 22139261 - 22139199
Alignment:
Q  325 ggcaagatcatttgctatcgttgctctcattgtttcagctttttgcatctcatctgtcttggc 387  Q
    |||||||| |||| || |||||||||||||||| ||||| |||||| || |||||||||||||    
T  22139261 ggcaagattatttactgtcgttgctctcattgtctcagccttttgcttcgcatctgtcttggc 22139199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 191 - 263
Target Start/End: Original strand, 32302743 - 32302818
Alignment:
Q  191 caaacgattggaacaagattattgcatgctcctatataag---ttggtagtatcacattgtttttcatcacaaggg 263  Q
    |||||||||||| |||   | ||||||||||||||||||    ||||||||||| |||||||||||||||||||||    
T  32302743 caaacgattggaccaaagctcttgcatgctcctatataaagacttggtagtatcccattgtttttcatcacaaggg 32302818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 32276180 - 32276213
Alignment:
Q  136 caagtctttctcattccaaatataacaaactcca 169  Q
    |||||||||||||||||||||||| |||||||||    
T  32276180 caagtctttctcattccaaatatagcaaactcca 32276213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0786 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: scaffold0786
Description:

Target: scaffold0786; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 27 - 260
Target Start/End: Original strand, 3171 - 3406
Alignment:
Q  27 ttatatttatttctccaaattggctatacaaatttgaaagaggctccaaaattttatctaatgcatttgttaagtcaaataaaccaatggtgaaaaatca 126  Q
    |||||||||||| ||||||| ||| ||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||| | |||||||    
T  3171 ttatatttatttttccaaataggcaatacaaatttgaaagaggctccaaagttttatctcattcatttgttaagtcaaataaaccaatggcggaaaatca 3270  T
Q  127 aaatatgagcaagtctttctcattccaaatataacaaactccataattagttaattaccacacacaaacgattggaacaagattattgcatgctcctata 226  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3271 aaatatgagcaagtgtttctcattccaaatataacaaactccataattagttaattaccacacacaaacgattggaccaagattattgcatgctcctata 3370  T
Q  227 taag--ttggtagtatcacattgtttttcatcacaa 260  Q
    ||||  ||||||||||||||||||||||||||||||    
T  3371 taagtcttggtagtatcacattgtttttcatcacaa 3406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0786; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 387
Target Start/End: Original strand, 3473 - 3533
Alignment:
Q  327 caagatcatttgctatcgttgctctcattgtttcagctttttgcatctcatctgtcttggc 387  Q
    |||||| |||| || |||||||||||||||| ||||| |||||| || |||||||||||||    
T  3473 caagattatttactgtcgttgctctcattgtctcagccttttgcttcgcatctgtcttggc 3533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 181; Significance: 1e-97; HSPs: 4)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 27 - 260
Target Start/End: Original strand, 1703 - 1938
Alignment:
Q  27 ttatatttatttctccaaattggctatacaaatttgaaagaggctccaaaattttatctaatgcatttgttaagtcaaataaaccaatggtgaaaaatca 126  Q
    |||||||||||| ||||||| ||| ||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||| | |||||||    
T  1703 ttatatttatttttccaaataggcaatacaaatttgaaagaggctccaaagttttatctcattcatttgttaagtcaaataaaccaatggcggaaaatca 1802  T
Q  127 aaatatgagcaagtctttctcattccaaatataacaaactccataattagttaattaccacacacaaacgattggaacaagattattgcatgctcctata 226  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1803 aaatatgagcaaatgtttctcattccaaatataacaaactccataattagttaattaccacacacaaacgattggaccaagattattgcatgctcctata 1902  T
Q  227 taag--ttggtagtatcacattgtttttcatcacaa 260  Q
    ||||  ||||||||||||||||||||||||||||||    
T  1903 taagtcttggtagtatcacattgtttttcatcacaa 1938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 24 - 260
Target Start/End: Original strand, 14684 - 14922
Alignment:
Q  24 taattatatttatttctccaaattggctatacaaatttgaaagaggctccaaaattttatctaatgcatttgttaagtcaaataaaccaatggtgaaaaa 123  Q
    ||||||||||||||| ||||||| ||| ||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||| ||||| | ||||    
T  14684 taattatatttatttttccaaataggcaatacaaatttgaaagaggctccaaagttttatctcattcatttgttaagtcaaataaacgaatggcggaaaa 14783  T
Q  124 tcaaaatatgagcaagtctttctcattccaaatataacaaactccataattagttaattaccacacacaaacgattggaacaagattattgcatgctcct 223  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  14784 tcaaaatatgagcaagtgtttctcattccaaatataacaaaatccataattagttaattaccacacacaaacgattggaccaagattattgcatgctcct 14883  T
Q  224 atataag--ttggtagtatcacattgtttttcatcacaa 260  Q
    |||||||  |||||||||| |||||||||||||||||||    
T  14884 atataagtcttggtagtatgacattgtttttcatcacaa 14922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 387
Target Start/End: Original strand, 2003 - 2065
Alignment:
Q  325 ggcaagatcatttgctatcgttgctctcattgtttcagctttttgcatctcatctgtcttggc 387  Q
    |||||||| |||| || |||||||||||||||| ||||| |||||| || |||||||||||||    
T  2003 ggcaagattatttactgtcgttgctctcattgtctcagccttttgcttcgcatctgtcttggc 2065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 387
Target Start/End: Original strand, 14987 - 15049
Alignment:
Q  325 ggcaagatcatttgctatcgttgctctcattgtttcagctttttgcatctcatctgtcttggc 387  Q
    |||||||| |||| || |||||||||||||||| ||||| |||||| || |||||||||||||    
T  14987 ggcaagattatttactgtcgttgctctcattgtctcagccttttgcttcgcatctgtcttggc 15049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1678 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: scaffold1678
Description:

Target: scaffold1678; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 20 - 263
Target Start/End: Complemental strand, 1336 - 1091
Alignment:
Q  20 atagtaattatatttatttctccaaattggctatacaaatttgaaagaggctccaaaattttatctaatgcatttgttaagtcaaataaaccaatggtga 119  Q
    ||||||||||||||||||| ||||||| |   |||||||||||||||||||||| || |||||||| || |||||||||||||||||||| ||||||||     
T  1336 atagtaattatatttatttttccaaatagataatacaaatttgaaagaggctccgaagttttatctcattcatttgttaagtcaaataaatcaatggtgt 1237  T
Q  120 aaaatcaaaatatgagcaagtctttctcattccaaatataacaaactccataattagttaattaccacacacaaacgattggaacaagattattgcatgc 219  Q
    |||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  1236 aaaatataaatatgagcaagtctttctcattccaattataacaaactccataattagttaattaccacacacaaacgattggaccaagattcttgcatgc 1137  T
Q  220 tcctatataag--ttggtagtatcacattgtttttcatcacaaggg 263  Q
    ||||| |||||  || |||||||||||||||||||||| |||||||    
T  1136 tcctacataagactttgtagtatcacattgtttttcattacaaggg 1091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1678; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 325 - 387
Target Start/End: Complemental strand, 1029 - 967
Alignment:
Q  325 ggcaagatcatttgctatcgttgctctcattgtttcagctttttgcatctcatctgtcttggc 387  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||| |||||| |||||||||    
T  1029 ggcaagatcattttctatcgttgctctcattgtctcagctttttgcttctcatatgtcttggc 967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University