View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16683_high_3 (Length: 292)
Name: NF16683_high_3
Description: NF16683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16683_high_3 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 40545458 - 40545754
Alignment:
| Q |
1 |
tcaattgctaatatcaaaattattatcaagt----gaaagacacttactagttgactaggccatttgctttgctttgcnnnnnnnat--------attct |
88 |
Q |
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||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||| |||| | || ||||| |
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| T |
40545458 |
tcaattgctaatatcaaaactattatcaagtatttgaaagacactttctagttgactaggccatttgctttcctttcctttttttatgcatgcatattct |
40545557 |
T |
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| Q |
89 |
tcattgtagtttccgaatcctgatatgttatcatttggatggataagtgtcagaagttcaatattaataatacaaagttctttcttttacgtctttatat |
188 |
Q |
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| T |
40545558 |
tcattgtagtttcagaatcctgatatgttatcatttggatggataagtgtcagaagttcaatat---taatacaaagttctttcttttacgtctttatat |
40545654 |
T |
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| Q |
189 |
attgtttgtgcctattaaattctttaaactcgtgaccttgattgatccatgtagtttggtcaaatgagtcgcacttatgtgatttggtttcagtaccttg |
288 |
Q |
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| T |
40545655 |
attgattgtgcctattaaattctttaaactcgtgacc----ttgatccatgtagtttggtcaaatgagtcgcacttatgtgatttggtttcagtaccttg |
40545750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 157
Target Start/End: Original strand, 31789870 - 31790028
Alignment:
| Q |
5 |
ttgctaatatcaaaattattatcaagt----gaaagacacttactagttgactaggccatttgctttgctttgcnnnnnnn--atattcttcattgtagt |
98 |
Q |
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| T |
31789870 |
ttgctaatatcaaaattattatcaagtatttgaaagacacattcttgttgcctaggccttttgctttccttttttatgcctgcatattctccattgtagt |
31789969 |
T |
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| Q |
99 |
ttccgaatcctgatatgttatcatttggatggataagtgtcagaagttcaatattaata |
157 |
Q |
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| T |
31789970 |
ttcagaatccagatatgttatcatttggatggataaatgtcataagttcaatattaata |
31790028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 292
Target Start/End: Original strand, 31790034 - 31790138
Alignment:
| Q |
185 |
atatattgtttgtgcctattaaattctttaaactcgtgaccttgattgatccatgtagtttggtcaaatg-agtcgcacttatgtgatttggtttcagta |
283 |
Q |
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| T |
31790034 |
atatattgtttgtgcctgttaaattctttaaattcgtgacc----ttgatccatgcaatttggttaaatgaagtcacacctatgcaatttggtttcagta |
31790129 |
T |
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| Q |
284 |
ccttgctct |
292 |
Q |
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| T |
31790130 |
ccttgctct |
31790138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 292
Target Start/End: Original strand, 32033344 - 32033448
Alignment:
| Q |
185 |
atatattgtttgtgcctattaaattctttaaactcgtgaccttgattgatccatgtagtttggtcaaatga-gtcgcacttatgtgatttggtttcagta |
283 |
Q |
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||||||||||||||||| |||||||||||||| ||||||||||||| ||||| | |||||| |||| | ||| ||| |||| |||||||||||||| |
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| T |
32033344 |
atatattgtttgtgcctgttaaattctttaaattcgtgaccttgat----ccatgcaatttggttaaattaagtcacacctatgcaatttggtttcagta |
32033439 |
T |
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| Q |
284 |
ccttgctct |
292 |
Q |
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| T |
32033440 |
ccttgctct |
32033448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 32033218 - 32033297
Alignment:
| Q |
1 |
tcaattgctaatatcaaaattatt----atcaagt----gaaagacacttactagttgactaggccatttgctttgcttt |
72 |
Q |
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| T |
32033218 |
tcaattgctaatatcaaaattatttattatcaagtatttgaaagacacattctagttgcctaggccatttgctttccttt |
32033297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 82 - 230
Target Start/End: Original strand, 5162832 - 5162978
Alignment:
| Q |
82 |
atattcttcattgtagtttccgaatcctgatatgttatcatttggatggataagtgtcagaagttcaatattaataatacaaagttctttctttt-acgt |
180 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| ||| ||||| | | ||||||||||||||| |||||||||||||||| |||| |
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| T |
5162832 |
atattcttcattgtagtttcagaatcctgatatgttatcatttagatagataaatacctttagttcaatattaata---caaagttctttctttttacgt |
5162928 |
T |
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| Q |
181 |
ctttatatattgtttgtgcctattaaattctttaaactcgtgaccttgat |
230 |
Q |
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| T |
5162929 |
ctttatatattgtttgtgcctattaaattctttaaactcgtgaccttgat |
5162978 |
T |
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