View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16683_high_4 (Length: 278)
Name: NF16683_high_4
Description: NF16683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16683_high_4 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 6864370 - 6864108
Alignment:
| Q |
16 |
gttgctactgctgttgccattaacgatcggcctagttgtttccgatttccaagggcaaatggaactggtgttgaactaccaccagggaatagaggcattc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6864370 |
gttgctactgctgttgccattaacgatcggcctagttgtttccgatttccaagggcaaatggaactggtgttgaactaccaccagggaatagaggcattc |
6864271 |
T |
|
| Q |
116 |
ctatggaggtgagttagaattatagtcacatttatacttcacagttatgcccttatgaatatgattaaaaagaattgttattgttagcaacatattctct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6864270 |
ctatggaggtgagttagaattatagtcacatttatacttcacagttatgcccttatgaatatgattaaaaagaattgttattgttagcaacatattctct |
6864171 |
T |
|
| Q |
216 |
taacacgtcatttttaacacgaatcctttatctaatattagaataaattcacttggattccac |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6864170 |
taacacgtcatttttaacacgaatcctttatctaatattagaataaattcacttggattccac |
6864108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University