View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16683_high_5 (Length: 252)
Name: NF16683_high_5
Description: NF16683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16683_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 6173312 - 6173553
Alignment:
| Q |
4 |
tcattttggcataatctccttcaagtgtatcataatttgaatccaactcccgcttcttcttttttacattatcaatcttctcgcgggtttgtatggtaat |
103 |
Q |
| |
|
||||| ||||||||| ||||||||| || |||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| | |
|
|
| T |
6173312 |
tcattatggcataatttccttcaagcgtctcataattcgaatccaactcccgcttcttcttttttagattatcaatcttctcacgggtttgtatggtcgt |
6173411 |
T |
|
| Q |
104 |
agaggctacaattttagcttcttccacaatttcagttctcttctccttacattttgagcaagcatcctctaactacgacttctcttgttgaacaccctac |
203 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| |
|
|
| T |
6173412 |
agaggctacatttttagcttcttccacaatttcagttctcttctccttacattttgagcaagcatcctctaactgtgacttctcttgttga--accttac |
6173509 |
T |
|
| Q |
204 |
aagctttctcctcgagcaaacgaatctgtgctttgatatcttca |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6173510 |
gtgctttctcctcgagcaaacgaatctgtgctttgatatcttca |
6173553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 6135257 - 6135498
Alignment:
| Q |
4 |
tcattttggcataatctccttcaagtgtatcataatttgaatccaactcccgcttcttcttttttacattatcaatcttctcgcgggtttgtatggtaat |
103 |
Q |
| |
|
||||| |||||| || ||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6135257 |
tcattatggcatgatttccttcaagcgtatcataatttgaatccaacttccgcttcttcttgtttacattatcaatcttctcgcgggtttgtatggtcat |
6135356 |
T |
|
| Q |
104 |
agaggctacaattttagcttcttccacaatttcagttctcttctccttacattttgagcaagcatcctctaactacgacttctcttgttgaacaccctac |
203 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||| || ||| ||| |
|
|
| T |
6135357 |
agaggctacatttttagcttcttccaaaatttcagatctcttctccttacattttgagcaagcatcctctaactgtgacttctcctgt--aaaaccttac |
6135454 |
T |
|
| Q |
204 |
aagctttctcctcgagcaaacgaatctgtgctttgatatcttca |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6135455 |
gtgctttctcctcgagcaaacgaatctgtgctttgatatcttca |
6135498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 247
Target Start/End: Original strand, 6126812 - 6126929
Alignment:
| Q |
128 |
cacaatttcagttctcttctccttacattttgagcaagcatcctctaactacgacttctcttgttgaacaccctacaagctttctcctcgagcaaacgaa |
227 |
Q |
| |
|
||||||| || || ||||||| |||||||| ||||| |||| ||||||| |||||||||||||||| ||| ||| || | |||||||||||| ||| |
|
|
| T |
6126812 |
cacaattccacttttcttctctttacatttggagcagccatcttctaactgcgacttctcttgttga--accttacgtactctttcctcgagcaaaagaa |
6126909 |
T |
|
| Q |
228 |
tctgtgctttgatatcttca |
247 |
Q |
| |
|
| |||||||| ||||||||| |
|
|
| T |
6126910 |
tttgtgctttaatatcttca |
6126929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 10 - 247
Target Start/End: Original strand, 37615999 - 37616231
Alignment:
| Q |
10 |
tggcataatctccttcaagtgtatcataatttgaatccaactcccgcttcttcttttttacattatcaatcttctcgcgggtttgtatggtaatagaggc |
109 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37615999 |
tggcataatttccttcaagtgtatcataatttgaattcaactcccgcttc---ttttttacattatcaatcttctcgcgggtttgtatggtaatagaggc |
37616095 |
T |
|
| Q |
110 |
tacaattttagcttcttccacaatttcagttctcttctccttacattttgagcaagcatcctctaactacgacttctcttgttgaacaccctacaagctt |
209 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||| |||| |
|
|
| T |
37616096 |
tacatttttagcttcttccacaatttcagttatcttctccttacattttgagcaagcatcctctaactatggcttctcttgttga--accctacgtgctt |
37616193 |
T |
|
| Q |
210 |
tctcctcgagcaaacgaatctgtgctttgatatcttca |
247 |
Q |
| |
|
|||||| | |||||||| |||||||||||||||||||| |
|
|
| T |
37616194 |
tctccttgtgcaaacgattctgtgctttgatatcttca |
37616231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 79 - 247
Target Start/End: Complemental strand, 22083414 - 22083248
Alignment:
| Q |
79 |
tcttctcgcgggtttgtatggtaatagaggctacaattttagcttcttccacaatttcagttctcttctccttacattttgagcaagcatcctctaacta |
178 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22083414 |
tcttgtcgcgggtttgtatggtaatagaggctacatttttagcttcttccacaatttcagttatcttctccttacattttgagcaagcatcctctaacta |
22083315 |
T |
|
| Q |
179 |
cgacttctcttgttgaacaccctacaagctttctcctcgagcaaacgaatctgtgctttgatatcttca |
247 |
Q |
| |
|
| ||||||||||||| ||||||| |||||||||||| |||||||| | || ||||||||||||||| |
|
|
| T |
22083314 |
tggcttctcttgttga--accctacgtgctttctcctcgtgcaaacgattttgagctttgatatcttca |
22083248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 22083462 - 22083411
Alignment:
| Q |
10 |
tggcataatctccttcaagtgtatcataatttgaatccaactcccgcttctt |
61 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22083462 |
tggcataatttccttcaagtgtatcataatttgaattcaactcccgcttctt |
22083411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University