View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16683_high_6 (Length: 214)

Name: NF16683_high_6
Description: NF16683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16683_high_6
NF16683_high_6
[»] chr8 (2 HSPs)
chr8 (1-70)||(10911526-10911595)
chr8 (134-201)||(10911659-10911726)
[»] chr4 (3 HSPs)
chr4 (134-200)||(13733052-13733118)
chr4 (134-185)||(13724475-13724526)
chr4 (1-70)||(13724590-13724661)


Alignment Details
Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 10911526 - 10911595
Alignment:
Q  1 acccttcaacgttcaacatctcttctccgtaacatgagcaatctcccagaaaacacagtatacacaggtc 70  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10911526 acccttcatcgttcatcatctcttctccgtaacatgagcaatctcccagaaaacacagtatacacaggtc 10911595  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 10911659 - 10911726
Alignment:
Q  134 caatcacaatggtcactgcttatgattacccttctgctgttcacctcgatatcgccgccattcatatc 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  10911659 caatcacaatggtcactgcttatgattacccttctgctgttcacctcgatatggccgccattgatatc 10911726  T

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Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 134 - 200
Target Start/End: Complemental strand, 13733118 - 13733052
Alignment:
Q  134 caatcacaatggtcactgcttatgattacccttctgctgttcacctcgatatcgccgccattcatat 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  13733118 caatcacaatggtcactgtttatgattacccttctgctgttcacctcgatatggccgccattgatat 13733052  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 134 - 185
Target Start/End: Complemental strand, 13724526 - 13724475
Alignment:
Q  134 caatcacaatggtcactgcttatgattacccttctgctgttcacctcgatat 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13724526 caatcacaatggtcactgcttatgattacccttctgctgttcaccacgatat 13724475  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 13724661 - 13724590
Alignment:
Q  1 acccttcaacgttcaacatctcttctccgtaacatgagcaatctc--ccagaaaacacagtatacacaggtc 70  Q
    |||||||| |||||| ||||| ||||| |||||||||||||||||  |||||||||||||||||||||||||    
T  13724661 acccttcatcgttcatcatcttttctctgtaacatgagcaatctctcccagaaaacacagtatacacaggtc 13724590  T

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