View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16683_high_8 (Length: 201)

Name: NF16683_high_8
Description: NF16683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16683_high_8
NF16683_high_8
[»] chr3 (11 HSPs)
chr3 (45-179)||(4871557-4871689)
chr3 (50-181)||(4826434-4826564)
chr3 (45-179)||(4845798-4845930)
chr3 (45-181)||(4841857-4841991)
chr3 (50-181)||(4835176-4835306)
chr3 (45-178)||(4856476-4856608)
chr3 (45-178)||(4878211-4878343)
chr3 (45-181)||(4852505-4852640)
chr3 (45-175)||(4860774-4860904)
chr3 (45-175)||(4880781-4880911)
chr3 (147-181)||(4837426-4837460)
[»] chr7 (1 HSPs)
chr7 (42-158)||(21703749-21703864)


Alignment Details
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 45 - 179
Target Start/End: Original strand, 4871557 - 4871689
Alignment:
Q  45 taagaataagaaaaaggaattagccattttatgaagtgatattattattgtgttggtgcataatacatagggagttaactggttttatatactagttaga 144  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||  |||||||||||||    
T  4871557 taaggataagaaaaaggaattagccattttaagaagtgatattattattgtgttggtgcataatacatatggagttaactggctt--tatactagttaga 4871654  T
Q  145 gactcaatgtgagtttatggtcaatctaagtcatt 179  Q
    |||||||||||||||||||||||||||||||||||    
T  4871655 gactcaatgtgagtttatggtcaatctaagtcatt 4871689  T

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Target: chr3; HSP #2
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 50 - 181
Target Start/End: Original strand, 4826434 - 4826564
Alignment:
Q  50 ataagaaaaaggaattagccattttatgaagtgatattattatt-gtgttggtgcataatacatagggagttaactggttttatatactagttagagact 148  Q
    ||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||  |||||||||||||    
T  4826434 ataagaaaaaggaattagccactttaagaagtgatattattattagtgttggtgcataatacatagagagttaactggttttata--ctagttagagact 4826531  T
Q  149 caatgtgagtttatggtcaatctaagtcattta 181  Q
    |||||||||||||||||||||||||||||||||    
T  4826532 caatgtgagtttatggtcaatctaagtcattta 4826564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 45 - 179
Target Start/End: Original strand, 4845798 - 4845930
Alignment:
Q  45 taagaataagaaaaaggaattagccattttatgaagtgatattattattgtgttggtgcataatacatagggagttaactggttttatatactagttaga 144  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||  |||||||||||||    
T  4845798 taaggataagaaaaaggaattagccattttaagaagtgatattattattgtgttggtgcataatacataggtagttaactggctt--tatactagttaga 4845895  T
Q  145 gactcaatgtgagtttatggtcaatctaagtcatt 179  Q
    |||||||||||| ||| ||||||||||||||||||    
T  4845896 gactcaatgtgattttttggtcaatctaagtcatt 4845930  T

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Target: chr3; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 45 - 181
Target Start/End: Original strand, 4841857 - 4841991
Alignment:
Q  45 taagaataagaaaaaggaattagccattttatgaagtgatattattattgtgttggtgcataatacatagggagttaactggttttatatactagttaga 144  Q
    |||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||  ||||||| |||||    
T  4841857 taaggataagaaaaaggatttagccattttaagaagtgatattattattgtgttggtgcataatacatatggaattaactggttt--tatactaattaga 4841954  T
Q  145 gactcaatgtgagtttatggtcaatctaagtcattta 181  Q
    ||||||||||||||||||||||||||||||| |||||    
T  4841955 gactcaatgtgagtttatggtcaatctaagttattta 4841991  T

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Target: chr3; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 50 - 181
Target Start/End: Original strand, 4835176 - 4835306
Alignment:
Q  50 ataagaaaaaggaattagccattttatgaagtgatattattatt-gtgttggtgcataatacatagggagttaactggttttatatactagttagagact 148  Q
    ||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||  ||| |||||||||    
T  4835176 ataagaaaaaggatttagccattttaagaagtgatattattattagtgttggtgcataatacatatggagttaactggttttata--ctaattagagact 4835273  T
Q  149 caatgtgagtttatggtcaatctaagtcattta 181  Q
    ||| |||||||||||||||||| ||||||||||    
T  4835274 caaagtgagtttatggtcaatcaaagtcattta 4835306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 4856476 - 4856608
Alignment:
Q  45 taagaataagaaaaaggaattagccattttatgaagtgatattattatt-gtgttggtgcataatacatagggagttaactggttttatatactagttag 143  Q
    |||| |||||||||| ||||||||||||||| |||||||||| |||||| |||||||||||||||||||| |||||  ||||||||||||  ||||||||    
T  4856476 taaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggtgcataatacatatggagtatactggttttata--ctagttag 4856573  T
Q  144 agactcaatgtgagtttatggtcaatctaagtcat 178  Q
    |||||||||||||||||||||||||||||||||||    
T  4856574 agactcaatgtgagtttatggtcaatctaagtcat 4856608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 4878211 - 4878343
Alignment:
Q  45 taagaataagaaaaaggaattagccattttatgaagtgatattattatt-gtgttggtgcataatacatagggagttaactggttttatatactagttag 143  Q
    |||| |||||||||| ||||||||||||||| |||||||||| |||||| |||||||||||||||||||| |||||  ||||||||||||  ||||||||    
T  4878211 taaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggtgcataatacatatggagtatactggttttata--ctagttag 4878308  T
Q  144 agactcaatgtgagtttatggtcaatctaagtcat 178  Q
    |||||||||||||||||||||||||||||||||||    
T  4878309 agactcaatgtgagtttatggtcaatctaagtcat 4878343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 45 - 181
Target Start/End: Original strand, 4852505 - 4852640
Alignment:
Q  45 taagaataagaaaaaggaattagccattttatgaagtgatattattatt-gtgttggtgcataatacatagggagttaactggttttatatactagttag 143  Q
    |||| |||||||||| ||||||||||||||| |||||||||| |||||| |||||||||||||||||||| |||||  ||||||||||||  ||||||||    
T  4852505 taaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggtgcataatacatatggagtatactggttttata--ctagttag 4852602  T
Q  144 agactcaatgtgagtttatggtcaatctaagtcattta 181  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  4852603 agactcaatgtgagtttatggtcgatctaagtcattta 4852640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 45 - 175
Target Start/End: Original strand, 4860774 - 4860904
Alignment:
Q  45 taagaataagaaaaaggaattagccattttatgaagtgatattattatt-gtgttggtgcataatacatagggagtt-aactggttttatatactagtta 142  Q
    |||| ||||||||||||| |||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||| |||||||||  |||||||||||    
T  4860774 taaggataagaaaaaggatttagccattttaagaagtgatataattattagtgttggtgcataatacatagggagttaaactggttt--tatactagtta 4860871  T
Q  143 gagactcaatgtgagtttatggtcaatctaagt 175  Q
    |||||||||||||||| ||| ||||||| ||||    
T  4860872 gagactcaatgtgagtctatcgtcaatcaaagt 4860904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 45 - 175
Target Start/End: Original strand, 4880781 - 4880911
Alignment:
Q  45 taagaataagaaaaaggaattagccattttatgaagtgatattattatt-gtgttggtgcataatacatagggagtt-aactggttttatatactagtta 142  Q
    |||| ||||||||||||| |||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||| |||||||||  |||||||||||    
T  4880781 taaggataagaaaaaggatttagccattttaagaagtgatataattattagtgttggtgcataatacatagggagttaaactggttt--tatactagtta 4880878  T
Q  143 gagactcaatgtgagtttatggtcaatctaagt 175  Q
    |||||||||||||||| ||| ||||||| ||||    
T  4880879 gagactcaatgtgagtctatcgtcaatcaaagt 4880911  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 181
Target Start/End: Original strand, 4837426 - 4837460
Alignment:
Q  147 ctcaatgtgagtttatggtcaatctaagtcattta 181  Q
    ||||||||||||||||||||||| |||||||||||    
T  4837426 ctcaatgtgagtttatggtcaatataagtcattta 4837460  T

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Target: chr7 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 42 - 158
Target Start/End: Complemental strand, 21703864 - 21703749
Alignment:
Q  42 tagtaagaataagaaaaaggaattagccattttatgaagtgatattattatt-gtgttggtgcataatacatagggagttaactggttttatatactagt 140  Q
    ||||||| | |||||||| ||||||||||||||| |||||||||||| |||| |||||||||||||| ||||||| ||||||| |||||  |||||||||    
T  21703864 tagtaaggacaagaaaaaagaattagccattttaagaagtgatattaatattagtgttggtgcataagacataggaagttaaccggttt--tatactagt 21703767  T
Q  141 tagagactcaatgtgagt 158  Q
    ||||||||||||| ||||    
T  21703766 tagagactcaatgggagt 21703749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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