View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16683_low_2 (Length: 408)
Name: NF16683_low_2
Description: NF16683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16683_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 6863683 - 6864071
Alignment:
| Q |
1 |
gaaatccaaataatttaggccaaattaaaaaagaaaaggattcataccttcaattttccatcaagaagaccatcaagggccatgaactgagcaacatgag |
100 |
Q |
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| T |
6863683 |
gaaatgcaaataatttaggccaaattaaaaaagaaaaggattcataccttcaattttccatcaagaagaccatcaagggccatgaactgagcaacatgag |
6863782 |
T |
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| Q |
101 |
aaccaaatcctcctattgatccttcttccacagtgatcaaaacctcgtgtgatttggctaggctgcgaatgagcgaatggtccaacggcttgcagaaacg |
200 |
Q |
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| T |
6863783 |
aaccaaatcctcctattgatccttcttccacagtgatcaaaacctcgtgtgatttggctaggctgcgaatgagtgaatggtccaacggcttgcagaaacg |
6863882 |
T |
|
| Q |
201 |
tgcatccaccaccgttacacgcaagccatgatcctccagcatggaggctgcagctacacagttctgaacagctgttccaaaacccaaaagtgccactctt |
300 |
Q |
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| T |
6863883 |
tgcatccgccaccgttacacgcaagccatgatcctccagcatggaggctgcagctacacagttctgaacagctgttccaaaacccaaaagtgccactctt |
6863982 |
T |
|
| Q |
301 |
tccccttcaatcagtatcctaccttttccaatctgttaatatgtcataacattaaatgttcgcttcatttgccaaaactgtttaaagag |
389 |
Q |
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| T |
6863983 |
tccccttcaatcagtatcctaccttttccaatctgttaatgtgtcataacattaaatgttcacttcatttgccaaaactgtttaaagag |
6864071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 45 - 351
Target Start/End: Complemental strand, 49148769 - 49148463
Alignment:
| Q |
45 |
taccttcaattttccatcaagaagaccatcaagggccatgaactgagcaacatgagaaccaaatcctcctattgatccttcttccacagtgatcaaaacc |
144 |
Q |
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| T |
49148769 |
taccttcaaatttccatctaagaggccatcaagggccatgaactgagcaacatgagaaccaaatcctccaattgatccttcttctacggtgatcagaacc |
49148670 |
T |
|
| Q |
145 |
tcgtgtgatttggctaggctgcgaatgagcgaatggtccaacggcttgcagaaacgtgcatccaccaccgttacacgcaagccatgatcctccagcatgg |
244 |
Q |
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| T |
49148669 |
tcgtgtgatttggccagactgcgaatcaaggatcgatccaatggcttgcagaaacgtgcatcagcaacggttaagcgcaagccatgttgttcaactaagg |
49148570 |
T |
|
| Q |
245 |
aggctgcagctacacagttctgaacagctgttccaaaacccaaaagtgccactctttccccttcaatcagtatcctaccttttccaatctgttaatatgt |
344 |
Q |
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| T |
49148569 |
aagccgcggccaaacagttctgaacggctgatccgtagcccaatagggctactctttccccttcaattagtatcctacctttcccaatctgttaaaatat |
49148470 |
T |
|
| Q |
345 |
cataaca |
351 |
Q |
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||||||| |
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| T |
49148469 |
cataaca |
49148463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 49712655 - 49712716
Alignment:
| Q |
64 |
agaagaccatcaagggccatgaactgagcaacatgagaaccaaatcctcctattgatccttc |
125 |
Q |
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| T |
49712655 |
agaagtccatcaagagcaataaattgagcaacatgggaaccaaatcctccaatagatccttc |
49712716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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