View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16683_low_3 (Length: 398)
Name: NF16683_low_3
Description: NF16683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16683_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 5 - 382
Target Start/End: Complemental strand, 7662709 - 7662332
Alignment:
| Q |
5 |
acaaagtactcaacaaatccttatgtttctcactcttaaaatttgaattttcacgttcatcaataatgtttgttaaaaatgcatcaaacttcttgtgtaa |
104 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7662709 |
acaaagtactcaacaaatccttatgtttctcactcttaaaatttgaattttcacgttcatcaataatgtttgttaaaaatgcatcaaacttcttgtgtaa |
7662610 |
T |
|
| Q |
105 |
ttttttcattttagcttgaactccttgaaggtctaaccattccaatgatggaataaaatcacttatattgaaaactccagctaacaccatcaattcaaga |
204 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7662609 |
ttttttcattttagcttgaactccttgaaggtctagccattccaatgatggaataaaatcacttatattgaaaactccagctaacaccatcaattcaaga |
7662510 |
T |
|
| Q |
205 |
accatttccttgaactcatcagctttagggtcaaaaccaccattgccatcattaaatactcttcttcctaacataaccctagcaagtgcatttgtggtac |
304 |
Q |
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||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7662509 |
accatttccttgaactcatcagccttagggtcacaaccaccattgccatcattgaatactcttcttcctaacataaccctagcaagtgcatttgtggtac |
7662410 |
T |
|
| Q |
305 |
atacattcaatagttgtcccaagttcacagcttttgtgtttgaataattacttgccaaattacttgtcaatcttgcta |
382 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7662409 |
atacattcaatagttgtcccaaattcacagcttttgtgtttgaataattacttgctaaattacttgtcaatcttgcta |
7662332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 5 - 382
Target Start/End: Original strand, 7621481 - 7621858
Alignment:
| Q |
5 |
acaaagtactcaacaaatccttatgtttctcactcttaaaatttgaattttcacgttcatcaataatgtttgttaaaaatgcatcaaacttcttgtgtaa |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7621481 |
acaaagtactcaacaaatccttatgtttctcactcttaaaatttgaattttcacgttcatcaataatgttcgttaaaaatgcatcaaacttcttgtgtaa |
7621580 |
T |
|
| Q |
105 |
ttttttcattttagcttgaactccttgaaggtctaaccattccaatgatggaataaaatcacttatattgaaaactccagctaacaccatcaattcaaga |
204 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7621581 |
tttcttcattttagcttgaactccttgaaggtctagccattccaatgatggaataaaatcacttatattgaaaactccagctaacaccatcaattcaaga |
7621680 |
T |
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| Q |
205 |
accatttccttgaactcatcagctttagggtcaaaaccaccattgccatcattaaatactcttcttcctaacataaccctagcaagtgcatttgtggtac |
304 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7621681 |
accatttccttgaactcatcagctttagggtcacaaccaccattgccatcattgaatactcttcttcctaacataaccctagcaagtgcattggtggtac |
7621780 |
T |
|
| Q |
305 |
atacattcaatagttgtcccaagttcacagcttttgtgtttgaataattacttgccaaattacttgtcaatcttgcta |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
7621781 |
atacattcaatagttgtcccaagttcacagcttttgtgtctgaataattacttgccaaattgcttgtcaatcttgcta |
7621858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 7667810 - 7667522
Alignment:
| Q |
19 |
aaatccttatgtttctcactcttaaaatttgaattttcacgttcatcaataatgtttgttaaaaatgcatcaaacttcttgtgtaattttttcattttag |
118 |
Q |
| |
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|||||||||||||| ||| ||||| |||| || ||| |||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
7667810 |
aaatccttatgtttttcattcttataattagatgcctcatgttcctcaataatgtttgttaaaaatgcatcaaattgtttgtgtaattttttcattttag |
7667711 |
T |
|
| Q |
119 |
cttgaactccttgaaggtctaaccattccaatgatggaataaaatcacttatattgaaaactccagctaacaccatcaattcaagaaccatttccttgaa |
218 |
Q |
| |
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|||||||| |||||||||||| |||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7667710 |
cttgaacttcttgaaggtctagccattctaatgaaggaataaaatcacttatattaaaaactccagctaacaccatcaattcaagaaccatttccttgaa |
7667611 |
T |
|
| Q |
219 |
ctcatcagctttagggtcaaaaccaccattgccatcattaaatactcttcttcctaacataaccctagcaagtgcatttgtggtacata |
307 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
7667610 |
ctcatcagctttagggtcacaaccaccattgccatcattgaatactcttcttcctaacataatcctagcaagtgcattggtggtacata |
7667522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 365
Target Start/End: Complemental strand, 7682215 - 7681855
Alignment:
| Q |
5 |
acaaagtactcaacaaatccttatgtttctcactcttaaaatttgaattttcacgttcatcaataatgtttgttaaaaatgcatcaaacttcttgtgtaa |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || || | ||| ||| | ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7682215 |
acaaagtactcaacaaatccttatgtttctcactcctagaaatagaagttttatgttcatcaataatgtttgttaaaaatgcatcaaacctcttgtgtaa |
7682116 |
T |
|
| Q |
105 |
ttttttcattttagcttgaactccttgaaggtctaaccattccaatgatggaataaaatcacttatattgaaaactccagctaacaccatcaattcaaga |
204 |
Q |
| |
|
||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| || |||||||||||| |||| |||||||| ||| | |
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|
| T |
7682115 |
tttcttcattttagcttgaagtccttgaaggtctagccattccaatgatggaataaaatcaccaatgttgaaaactccacctaaaaccatcaactcatca |
7682016 |
T |
|
| Q |
205 |
accatttccttgaactcatcagctttagggtcaaaaccaccattgccatcattaaatactcttcttcctaacataaccctagcaagtgcatttgtggtac |
304 |
Q |
| |
|
||||| |||| || ||| |||||||||| |||||| ||||||| || ||||||||||| || ||||||| || | |||| ||||||||||| || |||| |
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| T |
7682015 |
accatagccttaaaatcaccagctttaggatcaaaatcaccatttccttcattaaataccctccttcctatcacagccctggcaagtgcattggttgtac |
7681916 |
T |
|
| Q |
305 |
atacattcaatagttgtcccaagttcacagcttttgtgtttgaataattacttgccaaatt |
365 |
Q |
| |
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||||||| ||||||||||| ||||||||| |||||| |||||||| ||||||||||||||| |
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| T |
7681915 |
atacatttaatagttgtcctaagttcacaacttttgagtttgaatgattacttgccaaatt |
7681855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 325 - 382
Target Start/End: Complemental strand, 7661593 - 7661536
Alignment:
| Q |
325 |
aagttcacagcttttgtgtttgaataattacttgccaaattacttgtcaatcttgcta |
382 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7661593 |
aagttcacaacttttgtgtctgaataattacttgccaaattacttgtcaatcttgcta |
7661536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 304 - 378
Target Start/End: Complemental strand, 7665545 - 7665475
Alignment:
| Q |
304 |
catacattcaatagttgtcccaagttcacagcttttgtgtttgaataattacttgccaaattacttgtcaatctt |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||| |
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|
| T |
7665545 |
catacattcaatagttgtcccaagttcacagcttttgtgtctgaa----cacttgccaaatttcttgtcaatctt |
7665475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 64 - 338
Target Start/End: Complemental strand, 45480182 - 45479902
Alignment:
| Q |
64 |
tcaataatgtttgttaaaaatgcatcaaacttcttgtgtaattttttcattttagcttgaactccttgaaggtctaaccattccaatgatggaataaaat |
163 |
Q |
| |
|
||||||||| |||||||||||| |||||| | ||||||||||||||||||||| |||| || |||||||| || ||||| || || | |||| ||||| |
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|
| T |
45480182 |
tcaataatgcttgttaaaaatgtatcaaatcttttgtgtaattttttcattttaccttgcacaccttgaagatccaaccactcgaaagcaggaagaaaat |
45480083 |
T |
|
| Q |
164 |
cacttatattgaaaactccagctaacaccatcaattcaagaaccatttccttgaactcatcagctttagg------gtcaaaaccaccattgccatcatt |
257 |
Q |
| |
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||| ||||||||||| ||||| || ||||| | ||||| |||||| ||| ||||||||||| |||| ||| | |||||||| || ||||| |
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|
| T |
45480082 |
caccaatattgaaaacaccagccaataccataagttcaacaaccatagacttaaactcatcagccctaggatcacattcacacccaccattcccctcatt |
45479983 |
T |
|
| Q |
258 |
aaatactcttcttcctaacataaccctagcaagtgcatttgtggtacatacattcaatagttgtcccaagttcacagcttt |
338 |
Q |
| |
|
|||||||| | ||||| ||| |||||||| | ||| ||||| || ||||||||||| | |||||| ||||| || ||||| |
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| T |
45479982 |
aaatactcgccgtcctatcattaccctagccaatgcgtttgtcgtgcatacattcaacatttgtcctaagtttactgcttt |
45479902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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