View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16683_low_9 (Length: 236)

Name: NF16683_low_9
Description: NF16683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16683_low_9
NF16683_low_9
[»] chr2 (7 HSPs)
chr2 (24-152)||(22144717-22144843)
chr2 (25-152)||(27561237-27561363)
chr2 (25-152)||(37457675-37457801)
chr2 (150-221)||(22144620-22144690)
chr2 (150-221)||(27561390-27561460)
chr2 (150-221)||(37457828-37457898)
chr2 (165-221)||(7195190-7195245)
[»] chr3 (2 HSPs)
chr3 (24-152)||(38510286-38510412)
chr3 (150-221)||(38510189-38510259)
[»] chr4 (3 HSPs)
chr4 (25-152)||(5742538-5742664)
chr4 (150-221)||(5742441-5742511)
chr4 (157-221)||(1661884-1661947)
[»] chr7 (1 HSPs)
chr7 (165-221)||(38319566-38319621)
[»] chr8 (1 HSPs)
chr8 (72-143)||(22783042-22783114)


Alignment Details
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 22144843 - 22144717
Alignment:
Q  24 gcaaatgcattcttatagttttggtttggtaagttatatgacacatttaataggttgaaaatgtggctttggttctcaagaactcctaatttaaatggat 123  Q
    |||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22144843 gcaaatgcattcttatagttttggtttgctaagttatatgaca--tttaataggttgaaaatgtggctttggttctcaagaactcctaatttaaatggat 22144746  T
Q  124 ttcatggggcttaaacaaggtaaaatttg 152  Q
    |||||||||||||||||||||||||||||    
T  22144745 ttcatggggcttaaacaaggtaaaatttg 22144717  T

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Target: chr2; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 25 - 152
Target Start/End: Original strand, 27561237 - 27561363
Alignment:
Q  25 caaatgcattcttatagttttggtttggtaagttatatgacacatttaataggttgaaaatgtggctttggttctcaagaactcctaatttaaatggatt 124  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27561237 caaatgcattcttatagttttggtttggtaagttatatgaca--tttaataggttgaaaatgtggctttggttctcaagaactcctaatttaaatggatt 27561334  T
Q  125 tcat-ggggcttaaacaaggtaaaatttg 152  Q
    |||| ||||||||||||||||||||||||    
T  27561335 tcatgggggcttaaacaaggtaaaatttg 27561363  T

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Target: chr2; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 25 - 152
Target Start/End: Original strand, 37457675 - 37457801
Alignment:
Q  25 caaatgcattcttatagttttggtttggtaagttatatgacacatttaataggttgaaaatgtggctttggttctcaagaactcctaatttaaatggatt 124  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37457675 caaatgcattcttatagttttggtttggtaagttatatgaca--tttaataggttgaaaatgtggctttggttctcaagaactcctaatttaaatggatt 37457772  T
Q  125 tcat-ggggcttaaacaaggtaaaatttg 152  Q
    |||| ||||||||||||||||||||||||    
T  37457773 tcatgggggcttaaacaaggtaaaatttg 37457801  T

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Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 22144690 - 22144620
Alignment:
Q  150 ttgatagactcaatcataagtccataaaaggtaaagctaaaattgatttgatttactttcatactttgtttt 221  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22144690 ttgatagactcaatcataattccataaaaggtaaagctaaaattga-ttgatttactttcatactttgtttt 22144620  T

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Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 27561390 - 27561460
Alignment:
Q  150 ttgatagactcaatcataagtccataaaaggtaaagctaaaattgatttgatttactttcatactttgtttt 221  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  27561390 ttgatagactcaatcataagtccatacaaggtaaagctaaaattga-ttgatttactttcatactttgtttt 27561460  T

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Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 37457828 - 37457898
Alignment:
Q  150 ttgatagactcaatcataagtccataaaaggtaaagctaaaattgatttgatttactttcatactttgtttt 221  Q
    |||||||||||||||||||||| ||| |||||||||||||||| || |||||||||||||||||||||||||    
T  37457828 ttgatagactcaatcataagtctatacaaggtaaagctaaaatcga-ttgatttactttcatactttgtttt 37457898  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 7195190 - 7195245
Alignment:
Q  165 ataagtccataaaaggtaaagctaaaattgatttgatttactttcatactttgtttt 221  Q
    ||||| ||||| ||||||||||||||||| ||| |||||||||||||||||||||||    
T  7195190 ataagaccatacaaggtaaagctaaaattaatt-gatttactttcatactttgtttt 7195245  T

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Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 38510412 - 38510286
Alignment:
Q  24 gcaaatgcattcttatagttttggtttggtaagttatatgacacatttaataggttgaaaatgtggctttggttctcaagaactcctaatttaaatggat 123  Q
    ||||||||||||||||||||||||||||||||| |||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38510412 gcaaatgcattcttatagttttggtttggtaagctatacgaca--tttaataggttgaaaatgtggctttggttctcaagaactcctaatttaaatggat 38510315  T
Q  124 ttcatggggcttaaacaaggtaaaatttg 152  Q
    |||||||||||||||||||||||||||||    
T  38510314 ttcatggggcttaaacaaggtaaaatttg 38510286  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 38510259 - 38510189
Alignment:
Q  150 ttgatagactcaatcataagtccataaaaggtaaagctaaaattgatttgatttactttcatactttgtttt 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38510259 ttgatagactcaatcataagtccataaaaggtaaagctaaaattga-ttgatttactttcatactttgtttt 38510189  T

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Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 25 - 152
Target Start/End: Complemental strand, 5742664 - 5742538
Alignment:
Q  25 caaatgcattcttatagttttggtttggtaagttatatgacacatttaataggttgaaaatgtggctttggttctcaagaactcctaatttaaatggatt 124  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5742664 caaatgcattcttatagttttggtttggtaagttatatgaca--tttaataggttgaaaatgtggctttggttctcaagaactcctaatttaaatggact 5742567  T
Q  125 tcat-ggggcttaaacaaggtaaaatttg 152  Q
    |||| ||||||||||||||||||||||||    
T  5742566 tcatgggggcttaaacaaggtaaaatttg 5742538  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 5742511 - 5742441
Alignment:
Q  150 ttgatagactcaatcataagtccataaaaggtaaagctaaaattgatttgatttactttcatactttgtttt 221  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  5742511 ttgatagactcaatcataagtccatacaaggtaaagctaaaattga-ttgatttactttcatactttgtttt 5742441  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 1661947 - 1661884
Alignment:
Q  157 actcaatcataagtccataaaaggtaaagctaaaattgatttgatttactttcatactttgtttt 221  Q
    |||||||  ||||| |||| |||||||| |||||||||||| ||||||||||||| |||||||||    
T  1661947 actcaatagtaagttcatacaaggtaaaactaaaattgatt-gatttactttcattctttgtttt 1661884  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 38319566 - 38319621
Alignment:
Q  165 ataagtccataaaaggtaaagctaaaattgatttgatttactttcatactttgtttt 221  Q
    ||||| ||||| ||||||||| ||||||||||| |||||||||||||||||||||||    
T  38319566 ataagaccatacaaggtaaagttaaaattgatt-gatttactttcatactttgtttt 38319621  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 143
Target Start/End: Original strand, 22783042 - 22783114
Alignment:
Q  72 aataggttgaaaatgtggctttggttctcaagaactcc-taatttaaatggatttcatggggcttaaacaagg 143  Q
    |||| ||||||||| |||||||||||||| | |||||| ||| |||||||||||| ||  |||||||| ||||    
T  22783042 aatatgttgaaaatatggctttggttctctataactccataacttaaatggattttattaggcttaaagaagg 22783114  T

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