View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16684_high_8 (Length: 258)

Name: NF16684_high_8
Description: NF16684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16684_high_8
NF16684_high_8
[»] chr8 (4 HSPs)
chr8 (12-242)||(42091804-42092033)
chr8 (100-242)||(42555311-42555452)
chr8 (8-100)||(41841243-41841335)
chr8 (11-100)||(42555177-42555266)
[»] chr4 (1 HSPs)
chr4 (8-100)||(11652483-11652575)
[»] chr5 (1 HSPs)
chr5 (8-100)||(1716543-1716634)
[»] chr2 (5 HSPs)
chr2 (8-101)||(8979245-8979338)
chr2 (8-101)||(8984616-8984709)
chr2 (8-101)||(9026709-9026802)
chr2 (44-100)||(2841145-2841201)
chr2 (8-101)||(9020770-9020863)
[»] chr6 (1 HSPs)
chr6 (8-57)||(10791743-10791792)


Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 42092033 - 42091804
Alignment:
Q  12 aagaaaggtatgagtttaaagatgagtttgcttctggttttatatctcaggtccactcagttgctttcttgaactaccgatgtgggacttaataggcaga 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42092033 aagaaaggtatgagtttaaagatgagtttgcttctggttttatatctcaggtccactcagttgctttcttgaactaccgatgtgggacttaataggcaga 42091934  T
Q  112 tgatatgtggattggagcacccacccacccaccaaggagaatctcatgtcaataaaacatcttacagatttggagaagctctctatacaaaattgttagt 211  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  42091933 tgatatgtggtttggagcacccacccacccaccaaggagaa-ctcatgtcaataaaacatcttacagatttggagaagctctccatacaaaattgttggt 42091835  T
Q  212 caatcgcttgttgaatgaaaagggaggaatt 242  Q
    |||||||||||||||||||||||||| ||||    
T  42091834 caatcgcttgttgaatgaaaagggagaaatt 42091804  T

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Target: chr8; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 100 - 242
Target Start/End: Original strand, 42555311 - 42555452
Alignment:
Q  100 ttaataggcagatgatatgtggattggagcacccacccacccaccaaggagaatctcatgtcaataaaacatcttacagatttggagaagctctctatac 199  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  42555311 ttaataggcagaggatatgtggtttggagcacccacccacccaccaaggagaa-ctcatgtcaataaaacatcttacagatttggagaagctctccatac 42555409  T
Q  200 aaaattgttagtcaatcgcttgttgaatgaaaagggaggaatt 242  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  42555410 aaaattgttggtcaatcgcttgttgaatgaaaagggaggaatt 42555452  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 41841243 - 41841335
Alignment:
Q  8 ggccaagaaaggtatgagtttaaagatgagtttgcttctggttttatatctcaggtccactcagttgctttcttgaactaccgatgtgggact 100  Q
    |||| ||||||||||||||| ||||||| ||| ||||||| ||||||||||||  |||||||| |||||||||| ||| | ||||||||||||    
T  41841243 ggccgagaaaggtatgagttgaaagatgggttggcttctgcttttatatctcacatccactcacttgctttcttaaacgagcgatgtgggact 41841335  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 42555177 - 42555266
Alignment:
Q  11 caagaaaggtatgagtttaaagatgagtttgcttctggttttatatctcaggtccactcagttgctttcttgaactaccgatgtgggact 100  Q
    ||||||||||||||||| |||| |||| |  |||| |||||||||| |||  |||||||| |||||||||| ||||| ||||||||||||    
T  42555177 caagaaaggtatgagttgaaagttgagctaccttcaggttttatatatcacatccactcacttgctttcttaaactatcgatgtgggact 42555266  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 11652483 - 11652575
Alignment:
Q  8 ggccaagaaaggtatgagtttaaagatgagtttgcttctggttttatatctcaggtccactcagttgctttcttgaactaccgatgtgggact 100  Q
    |||| ||||||||||||||| ||||||| ||| ||||||||||||||||||||  |||||||| |||||||||| ||| | ||||||||||||    
T  11652483 ggccgagaaaggtatgagttaaaagatgggttggcttctggttttatatctcacatccactcacttgctttcttaaacgagcgatgtgggact 11652575  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 1716543 - 1716634
Alignment:
Q  8 ggccaagaaaggtatgagtttaaagatgagtttgcttctggttttatatctcaggtccactcagttgctttcttgaactaccgatgtgggact 100  Q
    |||| ||||||||||||||| |||||||   | ||||||  ||||||||||||  |||||||| |||||||| ||||||| ||||||||||||    
T  1716543 ggccgagaaaggtatgagttaaaagatgcactcgcttcttattttatatctcacatccactcacttgctttc-tgaactagcgatgtgggact 1716634  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 8979338 - 8979245
Alignment:
Q  8 ggccaagaaaggtatgagtttaaagatgagtttgcttctggttttatatctcaggtccactcagttgctttcttgaactaccgatgtgggactt 101  Q
    |||| ||||||||||||||| ||||||||  |||||| || |||||||| ||| ||||  ||| ||| || ||||||| ||| |||||||||||    
T  8979338 ggccgagaaaggtatgagttgaaagatgaacttgcttatgcttttatatatcaagtcccttcacttgattccttgaacaaccaatgtgggactt 8979245  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 8984709 - 8984616
Alignment:
Q  8 ggccaagaaaggtatgagtttaaagatgagtttgcttctggttttatatctcaggtccactcagttgctttcttgaactaccgatgtgggactt 101  Q
    |||| ||||||||||||||| ||| ||||  |||||| || |||||||| |||  |||  ||| ||| |||||||||| |||||||||||||||    
T  8984709 ggccgagaaaggtatgagttgaaatatgaacttgcttatgcttttatatatcacatcccttcacttgttttcttgaacaaccgatgtgggactt 8984616  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 9026802 - 9026709
Alignment:
Q  8 ggccaagaaaggtatgagtttaaagatgagtttgcttctggttttatatctcaggtccactcagttgctttcttgaactaccgatgtgggactt 101  Q
    |||| ||||||||||||||| |||||||| || |||| || ||||||||  ||  |||  ||| |||||||||||||| |||||| ||||||||    
T  9026802 ggccgagaaaggtatgagttgaaagatgaattcgcttatgcttttatataccacatcccttcacttgctttcttgaacaaccgatatgggactt 9026709  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 2841145 - 2841201
Alignment:
Q  44 tctggttttatatctcaggtccactcagttgctttcttgaactaccgatgtgggact 100  Q
    |||| ||||||||||||  |||||||| |||||||||| ||| ||||||||||||||    
T  2841145 tctgcttttatatctcacatccactcacttgctttcttcaacaaccgatgtgggact 2841201  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 9020863 - 9020770
Alignment:
Q  8 ggccaagaaaggtatgagtttaaagatgagtttgcttctggttttatatctcaggtccactcagttgctttcttgaactaccgatgtgggactt 101  Q
    |||| ||||| |||||| || ||||||||  | |||| ||||||||||| |||  |||| ||| |||||||| ||||| |||||||| ||||||    
T  9020863 ggccgagaaatgtatgaattgaaagatgaactcgcttatggttttatatatcacatccattcacttgctttcatgaacaaccgatgtaggactt 9020770  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 10791743 - 10791792
Alignment:
Q  8 ggccaagaaaggtatgagtttaaagatgagtttgcttctggttttatatc 57  Q
    |||| ||||||||||||||| ||||| ||||| ||||||| |||||||||    
T  10791743 ggccgagaaaggtatgagttgaaagaagagttggcttctgcttttatatc 10791792  T

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