View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16684_low_1 (Length: 453)

Name: NF16684_low_1
Description: NF16684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16684_low_1
NF16684_low_1
[»] chr1 (12 HSPs)
chr1 (15-446)||(6500073-6500504)
chr1 (129-246)||(47777834-47777951)
chr1 (135-256)||(47713377-47713498)
chr1 (111-228)||(6513021-6513138)
chr1 (111-280)||(6517368-6517537)
chr1 (135-246)||(47745970-47746081)
chr1 (135-256)||(47718171-47718292)
chr1 (132-228)||(6521519-6521615)
chr1 (135-256)||(47760292-47760413)
chr1 (132-256)||(6507092-6507216)
chr1 (135-242)||(47772879-47772986)
chr1 (186-246)||(6523575-6523635)
[»] chr5 (4 HSPs)
chr5 (135-310)||(28856572-28856747)
chr5 (135-310)||(28861849-28862024)
chr5 (134-226)||(28831460-28831552)
chr5 (129-239)||(27371777-27371887)
[»] scaffold0341 (2 HSPs)
scaffold0341 (132-256)||(1117-1241)
scaffold0341 (132-256)||(8771-8895)


Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 15 - 446
Target Start/End: Complemental strand, 6500504 - 6500073
Alignment:
Q  15 attccttccttactttgctctctcctaatcataattttcacttctcaaaccaaagctgatgttgtatacgatgaaatcaatttataccactacgtttgtg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6500504 attccttccttactttgctctctcctaatcataattttcacttctcaaaccaaagctgatgttgtatacgatgaaatcaatttataccactacgtttgtg 6500405  T
Q  115 atcaagacaacaatagaggtaactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaacta 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6500404 atcaagacaacaatagaggtaactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaacta 6500305  T
Q  215 cggtttctacaatttttcacatggcgaaaacagcgacaaagtctacgcaatcggactatgccgaggggatattatgccgaatagttgccgcagttgcctc 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6500304 cggtttctacaatttttcacatggcgaaaacagcgacaaagtctacgcgatcggactatgccgaggggatattatgccaaatagttgccgcagttgcctc 6500205  T
Q  315 agcagcgccagaacaaatctcacacgtaattgtccaaatcgaaaagaggctattttttggtcagaagacgaaaaatgcatgttacgttattcggaccgat 414  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6500204 agtagcgccagaacaaatctcacacgtaattgtccaaatcgaaaagaggctattttttggtcagaagatgaaaaatgcatgttacgttattcggaccgat 6500105  T
Q  415 tgatattaggagtaatggaagatgttcctatg 446  Q
    ||||||||||||||||||||||||||||||||    
T  6500104 tgatattaggagtaatggaagatgttcctatg 6500073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 129 - 246
Target Start/End: Original strand, 47777834 - 47777951
Alignment:
Q  129 agaggtaactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaatt 228  Q
    |||||||||||||||||||| |||||||| || | ||||||||||||||||||||| ||||||| |||||||||| ||||||| ||||||||||||||||    
T  47777834 agaggtaactacacaacaaacagcacctacgaaacaaacctcaacacacttttatccactctcatttccaacacacaaatcaattacggtttctacaatt 47777933  T
Q  229 tttcacatggcgaaaaca 246  Q
    | |||   ||||||||||    
T  47777934 tctcattcggcgaaaaca 47777951  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 135 - 256
Target Start/End: Complemental strand, 47713498 - 47713377
Alignment:
Q  135 aactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaatttttcac 234  Q
    ||||||||| | |||||||||||| | || ||||||||||| |||||||| | |||||||||||||||  ||||||||||||||||||||||||| ||      
T  47713498 aactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacggtttctacaatttctctt 47713399  T
Q  235 atggcgaaaacagcgacaaagt 256  Q
    ||||| |||||| |||||||||    
T  47713398 atggccaaaacaccgacaaagt 47713377  T

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Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 111 - 228
Target Start/End: Complemental strand, 6513138 - 6513021
Alignment:
Q  111 tgtgatcaagacaacaatagaggtaactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatca 210  Q
    ||||||||| | ||| || | |||||||||||||| || ||||||||| |||||||||| ||||| ||| |||| |||||||||||||||| ||| ||||    
T  6513138 tgtgatcaaaataacgatggtggtaactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatca 6513039  T
Q  211 actacggtttctacaatt 228  Q
    ||||||||||||| ||||    
T  6513038 actacggtttctataatt 6513021  T

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Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 111 - 280
Target Start/End: Complemental strand, 6517537 - 6517368
Alignment:
Q  111 tgtgatcaagacaacaatagaggtaactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatca 210  Q
    ||||||||| | ||| || | |||| ||||||||| || ||||||||  ||| |||||| ||||| |||||||| | |||||||||||||| ||||||||    
T  6517537 tgtgatcaaaataacgatggtggtatctacacaaccaacagcacctaccacacaaaccttaacacccttttatccattctcacttccaacaaagaaatca 6517438  T
Q  211 actacggtttctacaatttttcacatggcgaaaacagcgacaaagtctacgcaatcggactatgccgagg 280  Q
    ||||||||||||| || |  ||  |||||  |||||||||||||||  ||||||| ||||||||| ||||    
T  6517437 actacggtttctataactcctcttatggcataaacagcgacaaagtaaacgcaattggactatgcagagg 6517368  T

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Target: chr1; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 135 - 246
Target Start/End: Complemental strand, 47746081 - 47745970
Alignment:
Q  135 aactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaatttttcac 234  Q
    ||||||||| | |||||||||||| | || ||||||||||| |||||||| | |||||||||||||||  ||||||||||||||||||||||||| ||      
T  47746081 aactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacggtttctacaatttctctt 47745982  T
Q  235 atggcgaaaaca 246  Q
    ||||| ||||||    
T  47745981 atggccaaaaca 47745970  T

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Target: chr1; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 135 - 256
Target Start/End: Complemental strand, 47718292 - 47718171
Alignment:
Q  135 aactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaatttttcac 234  Q
    ||||||||| | |||||||||||| | || ||||||| ||| ||||| || | ||| |||||||||||||||||||||||||||||||||||||| ||      
T  47718292 aactacacagccaatagcacctatcaaaacaacctcagcacccttttgtccaatctaacttccaacacagaaatcaactacggtttctacaatttctctt 47718193  T
Q  235 atggcgaaaacagcgacaaagt 256  Q
    ||||| ||||||  ||||||||    
T  47718192 atggccaaaacactgacaaagt 47718171  T

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Target: chr1; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 132 - 228
Target Start/End: Original strand, 6521519 - 6521615
Alignment:
Q  132 ggtaactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaatt 228  Q
    ||||||||| ||||||| ||||||||  ||| |||||| ||||| |||||||| |||||||||||||||| ||| ||||||||||||||||| ||||    
T  6521519 ggtaactacccaacaaacagcacctaccacacaaaccttaacacccttttatccactctcacttccaacaaagatatcaactacggtttctataatt 6521615  T

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Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 135 - 256
Target Start/End: Complemental strand, 47760413 - 47760292
Alignment:
Q  135 aactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaatttttcac 234  Q
    ||||||||| | |||||||||||| | || |||||||||||  |||| || | ||| ||||||||| |||||||||||||||||||||||||| ||||      
T  47760413 aactacacagccaatagcacctatcaaaacaacctcaacaccgttttgtccaatctaacttccaacgcagaaatcaactacggtttctacaatatttctt 47760314  T
Q  235 atggcgaaaacagcgacaaagt 256  Q
    ||||| ||||||  ||||||||    
T  47760313 atggccaaaacactgacaaagt 47760292  T

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Target: chr1; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 132 - 256
Target Start/End: Complemental strand, 6507216 - 6507092
Alignment:
Q  132 ggtaactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaattttt 231  Q
    |||||||||||||| || ||||||||  ||| ||||||||| || ||| |||| |||||||||||||||| ||| || |||||||||||||| ||||  |    
T  6507216 ggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcct 6507117  T
Q  232 cacatggcgaaaacagcgacaaagt 256  Q
    |  |||||| ||||| |||||||||    
T  6507116 cttatggcgtaaacaccgacaaagt 6507092  T

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Target: chr1; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 135 - 242
Target Start/End: Original strand, 47772879 - 47772986
Alignment:
Q  135 aactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaatttttcac 234  Q
    ||||||||| | ||||||||||||||||| ||||| || || ||||| || | |||  ||||  | ||||||||||||||||||||||||||||| |||     
T  47772879 aactacacatccaatagcacctatgacaacaaccttaaaactcttttgtccagtctttcttctcatacagaaatcaactacggtttctacaatttctcat 47772978  T
Q  235 atggcgaa 242  Q
    ||||||||    
T  47772979 atggcgaa 47772986  T

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Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 6523575 - 6523635
Alignment:
Q  186 actctcacttccaacacagaaatcaactacggtttctacaatttttcacatggcgaaaaca 246  Q
    |||||||||||||||||  ||||||||||||||||||||||||| ||| | || |||||||    
T  6523575 actctcacttccaacacgcaaatcaactacggtttctacaatttctcaaacggtgaaaaca 6523635  T

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Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 135 - 310
Target Start/End: Complemental strand, 28856747 - 28856572
Alignment:
Q  135 aactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaatttttcac 234  Q
    |||||||||| ||| ||||| ||| |  |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| || |||     
T  28856747 aactacacaaaaaacagcacatatcaacaaaacctcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttctacaacttctcat 28856648  T
Q  235 atggcgaaaacagcgacaaagtctacgcaatcggactatgccgaggggatattatgccgaatagttgccgcagttg 310  Q
      |||||| ||| | ||||||| ||||| || ||| ||||| |||| ||| |||  || |||  ||||||||||||    
T  28856647 tcggcgaagacaacaacaaagtatacgccataggattatgcagaggagatgttaatccaaatgattgccgcagttg 28856572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 135 - 310
Target Start/End: Complemental strand, 28862024 - 28861849
Alignment:
Q  135 aactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaatttttcac 234  Q
    |||||||||| ||| ||||| ||| |  |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| || |||     
T  28862024 aactacacaaaaaacagcacatatcaacaaaacctcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttctacaacttctcat 28861925  T
Q  235 atggcgaaaacagcgacaaagtctacgcaatcggactatgccgaggggatattatgccgaatagttgccgcagttg 310  Q
      |||||| ||| | ||||||| ||||| || ||| ||||| |||| ||| |||  || |||  ||||||||||||    
T  28861924 tcggcgaagacaacaacaaagtatacgccataggattatgcagaggagatgttaatccaaatgattgccgcagttg 28861849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 134 - 226
Target Start/End: Complemental strand, 28831552 - 28831460
Alignment:
Q  134 taactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaa 226  Q
    ||||||||||| ||| ||||| ||| |  |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  28831552 taactacacaaaaaacagcacatatcaacaaaacctcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttctacaa 28831460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 27371887 - 27371777
Alignment:
Q  129 agaggtaactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaatt 228  Q
    ||||| |||||||||   ||||||||||| ||||| ||||| || || ||| |||  | | || ||||| |||||||||| ||||||||||| |||||||    
T  27371887 agaggaaactacacagtcaatagcacctacgacaacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactacggtttttacaatt 27371788  T
Q  229 tttcacatggc 239  Q
    | ||| |||||    
T  27371787 tctcatatggc 27371777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 132 - 256
Target Start/End: Complemental strand, 1241 - 1117
Alignment:
Q  132 ggtaactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaattttt 231  Q
    |||||||||||||| || ||||||||  ||| ||||||||| || ||| |||| |||||||||||||||| ||| || |||||||||||||| ||||  |    
T  1241 ggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcct 1142  T
Q  232 cacatggcgaaaacagcgacaaagt 256  Q
    |  |||||| ||||| |||||||||    
T  1141 cttatggcgtaaacaccgacaaagt 1117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 132 - 256
Target Start/End: Complemental strand, 8895 - 8771
Alignment:
Q  132 ggtaactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaattttt 231  Q
    |||||||||||||| || ||||||||  ||| ||||||||| || ||| |||| |||||||||||||||| ||| || |||||||||||||| ||||  |    
T  8895 ggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcct 8796  T
Q  232 cacatggcgaaaacagcgacaaagt 256  Q
    |  |||||| ||||| |||||||||    
T  8795 cttatggcgtaaacaccgacaaagt 8771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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