View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16684_low_2 (Length: 448)

Name: NF16684_low_2
Description: NF16684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16684_low_2
NF16684_low_2
[»] chr4 (3 HSPs)
chr4 (53-190)||(46551288-46551425)
chr4 (359-436)||(46551487-46551564)
chr4 (210-250)||(46551449-46551489)
[»] chr8 (1 HSPs)
chr8 (53-89)||(4941036-4941072)


Alignment Details
Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 53 - 190
Target Start/End: Original strand, 46551288 - 46551425
Alignment:
Q  53 gcattcgggatgaaagttttcgtgatatcaagcattatgcatttttaaatgtccgaatatatactagactggcctataatttagcttaaatagaaaaaac 152  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46551288 gcattcgggatgaaagttttcgtgatatcaagcattatacatttttaaatgtccgaatatatactagactggcctataatttagcttaaatagaaaaaac 46551387  T
Q  153 caaattaaaagtatatatatattcatgcactttcgccc 190  Q
    ||||||||||||||||||||||||||||||||||||||    
T  46551388 caaattaaaagtatatatatattcatgcactttcgccc 46551425  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 359 - 436
Target Start/End: Original strand, 46551487 - 46551564
Alignment:
Q  359 ttaattgtgttttccttttgacaacactgatttcaagtcaaggttttaagacaagtagtcggaacatctcacatagta 436  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  46551487 ttaattgtgttttccttttgacaacactggtttcaagtcaaggttttaagacaagtagtcagaacatctcacatagta 46551564  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 46551449 - 46551489
Alignment:
Q  210 acgaaattactagtagtagaaacacgtacgtgaatatatta 250  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46551449 acgaaattactagtagtagaaacacgtacgtgaatatatta 46551489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 4941036 - 4941072
Alignment:
Q  53 gcattcgggatgaaagttttcgtgatatcaagcatta 89  Q
    |||||||||||||||||||| ||||||||||||||||    
T  4941036 gcattcgggatgaaagtttttgtgatatcaagcatta 4941072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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