View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16684_low_3 (Length: 385)
Name: NF16684_low_3
Description: NF16684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16684_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 9 - 367
Target Start/End: Original strand, 36341908 - 36342273
Alignment:
| Q |
9 |
agcataggccaaattggaaacaaagaggaagcatgcgatattctcaattatatacaggttacaacaataacttggctgatcacaaattaaagtcagcact |
108 |
Q |
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| T |
36341908 |
agcataggccaaattggaaacaaagaggaagcatgtgatattctcaattatatacaggttacaacaataacttggctgatcacaaattaaagtcagcact |
36342007 |
T |
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| Q |
109 |
gattcagagagatattctcaattcaaattcaaatattactaaccgaaaatctatagaaaaattgcatcagtgat-------gagcaattgaattctctaa |
201 |
Q |
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| T |
36342008 |
gattcagagagatattctcaattcaaattcaaatattgctaactgaaaatctatagaaaaactgcatcagtgatgactgatgagcaattgaattctctaa |
36342107 |
T |
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| Q |
202 |
ttgaaagttaaatattgttagacgaatatctgcacaataattgcagcaatcagttcactgatcttacacatattgatatatcaaggcatctcttccatct |
301 |
Q |
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| T |
36342108 |
ttcaaagttaaatattgttagatgaatatctgcacaataattgcagcaatcagttcactgatcttacacatattgatatatcaaggcatctcttccatct |
36342207 |
T |
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| Q |
302 |
tcattagtgtttagactttaagaatatcaaggcaattcgtttgttcagggagctagatgcatacat |
367 |
Q |
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| T |
36342208 |
tcattagtgattagactttaagaatatcaaggcaattcgtttgttcagggagctagatgcatacat |
36342273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 57 - 291
Target Start/End: Original strand, 39865270 - 39865504
Alignment:
| Q |
57 |
tatatacaggttacaacaataacttggctgatcacaaattaaagtcagcactgattcagagagatattctcaattcaaattcaaatattactaaccgaaa |
156 |
Q |
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| T |
39865270 |
tatatacaggttacaacaataacttggctgatcgcaaattaaagtcagcactgattcagagagatattctcaattcaaattcaaatatcgctaactgaaa |
39865369 |
T |
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| Q |
157 |
atctatagaaaaattgcatcagtgatgagcaattgaattctctaattgaaagttaaatattgttagacgaatatctgcacaataattgcagcaatcagtt |
256 |
Q |
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||||||| || || ||||||||| | ||||||||||| ||||||| |||| |||| ||||||| ||||||||||||||||||||||| |||||||| |
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| T |
39865370 |
atctatacaataactgcatcagtaaccggcaattgaattatctaattcaaagacaaattctgttagatgaatatctgcacaataattgcagaaatcagtt |
39865469 |
T |
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| Q |
257 |
cactgatcttacacatattgatatatcaaggcatc |
291 |
Q |
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| T |
39865470 |
cactgatcttacacatattgatatatcaaggcatc |
39865504 |
T |
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