View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16684_low_4 (Length: 349)
Name: NF16684_low_4
Description: NF16684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16684_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 3651057 - 3651397
Alignment:
| Q |
1 |
ataagaaactcactaaatttcaatcatattctacatttcattctcttctatttctctcttctaattacattatcaatatatcacatcacactttctatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3651057 |
ataagaaactcactaaatttcaatcatattctacatttcattttcttctatttctctcttctaattacattataaatatatcacatcacactttctatat |
3651156 |
T |
|
| Q |
101 |
ctttcttttcaaatagagaaaatggtgtgagagtttcaatcaaattctatcaaataatattttctttataatcctttgataatttactgtcatgtgtata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3651157 |
ctttcttttcaaatagagaaaatggtgtgagagtttttatcaaattctatcaaataatattttctttataatcctttgataatttactgtcatgtgtata |
3651256 |
T |
|
| Q |
201 |
c-aatttttaactgaatgt--aacacttagtaaacgacacacatggggtccctactcaaaatctaggcagtaaaacgtgtcgtgaagaacaaacagacaa |
297 |
Q |
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| T |
3651257 |
caaatttttaactgaaagtaaaaaacttagtaaacgacacacatggggtccctactcaaaatctaggcagtaaaacgtgtcgtgaagaagaaacagacaa |
3651356 |
T |
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| Q |
298 |
atgatcaggtacacacaccactgacaatattattctttctt |
338 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
3651357 |
atgatcaggtacacacaccactgacaatattattctttctt |
3651397 |
T |
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