View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16685_high_1 (Length: 552)
Name: NF16685_high_1
Description: NF16685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16685_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 37492329 - 37491918
Alignment:
| Q |
1 |
ggattggatcagaatggatcggattggacggaacacagcttctgtaatctgaactgctttgctccttatcctttgccatttcaagtaaaacaaccaaaga |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37492329 |
ggattggatcggaatggatcggattggacggaacacagcttctgtaatctgaactgctttgctccttatcctttgccatttcaagtaaaacaaccaaaga |
37492230 |
T |
|
| Q |
101 |
aatcaaagcatcattacaaaaataagagtagcatcattctaatttgaaattaaatgtaaacagaatgatcttaaccactatgcagtatgcacatacacca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37492229 |
aatcaaagcatcattacaaaaataagagtagcatcattctgatttgaaattaaatgtaaacagaatgattttaaccactatgcagtatgcacatacacca |
37492130 |
T |
|
| Q |
201 |
tgatctaatcataaaacgttgttatactatcaatgattcaattttgatgaggccttatcatctgtttaaaaagattaactttgatgcactaaaacttttc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37492129 |
tgatctaatcataaaacgttgttatactatcaatgattcaattttgatgaggccttatcatatgtttaaaaagattaattttgatgcactaaaacttttc |
37492030 |
T |
|
| Q |
301 |
acactgtcacacaaccattaaacatcatttgtatgactaaggtttatatgactaaaatcacatatatgtaacgatcgctagtagatgatacgaagcacgg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37492029 |
acactgtcacacaaccattaaacatcatttgtatgactaaggtttatatgactaaaatcacatatatgtaatgatcgctagtagatgatacgaagcacgg |
37491930 |
T |
|
| Q |
401 |
acacactgacac |
412 |
Q |
| |
|
|||||||||||| |
|
|
| T |
37491929 |
acacactgacac |
37491918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 408 - 533
Target Start/End: Complemental strand, 37491854 - 37491728
Alignment:
| Q |
408 |
gacaccggggtacgccttcgatcagaagtgtaattgctac-tatatatatacaagacataagatttgaagaagaaaaagaaattgagattaatccttacc |
506 |
Q |
| |
|
||||||||||||| ||||| |||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37491854 |
gacaccggggtacaccttccatcagaagtgtatttgctatatatatatatacaagacataagatttgaaaaagaaaaagaaattgagattaatccttacc |
37491755 |
T |
|
| Q |
507 |
aaaccaagaatgtggaatccccctacc |
533 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
37491754 |
aaaccaagaatgtggaatccccctacc |
37491728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University