View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16685_high_5 (Length: 322)
Name: NF16685_high_5
Description: NF16685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16685_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 16659342 - 16659102
Alignment:
| Q |
19 |
aatcagattgatgacagcaaaaggccgaacttccactgtaacagacataaatcaatgcatc---taccacaccaccttaccatatacgtattaattaatg |
115 |
Q |
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| T |
16659342 |
aatcaaattgatgacagcaaaaggtccaacttccactgtaacagacataaatcaatgcatcatctaccacaccaccttaccatatatgtactaattaatg |
16659243 |
T |
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| Q |
116 |
tcgtgtaatttttcagaatttaatatttttatgtaacaat---ttatcaacatacccttttcacctatgctagaaagtaactaaaactgactcgaacat- |
211 |
Q |
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| T |
16659242 |
tcgtgtaatttttcagaatttaatatgtttatgtaacaatatatcatcaacatacccttttcacccatgctagaaagtaactaaaactgactcgaacatg |
16659143 |
T |
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| Q |
212 |
atgtgtttagtcgaaaacaattaaaagagaccaaattaatg |
252 |
Q |
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| T |
16659142 |
atgtgtttagtcgaaaacaattaaaagagaccaaattaatg |
16659102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 16659090 - 16659056
Alignment:
| Q |
271 |
atcattaagaagcatataaacatgatgagagtagt |
305 |
Q |
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| T |
16659090 |
atcattaagaagcatataaacatgatgagagtagt |
16659056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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