View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16685_high_8 (Length: 236)
Name: NF16685_high_8
Description: NF16685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16685_high_8 |
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| [»] scaffold0223 (1 HSPs) |
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Alignment Details
Target: scaffold0223 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 28006 - 27786
Alignment:
| Q |
1 |
catatgaatcaaaatgactaaaagattttaaaaggcaagacatcataaacaaatcaaggtattactgcacatgagccatgaaaagcacaaagaacaaatt |
100 |
Q |
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| T |
28006 |
catataaatcaaaatgactaaaagactttaaaaggcaagacatcataaacaaatcaaggtattactgcacatgagccatgaaaagcacaaagaacaaatt |
27907 |
T |
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| Q |
101 |
caacacaaaagcttaatagaatttcgacccattaataaaagaaataaaggatccatgaaaagtgcatatcaaatgtaatctttgtgataaaagcatatga |
200 |
Q |
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| T |
27906 |
caacacaaaagctcaatagaatttcgacccattaagaaaagaaataaaggatccatgaaaagtgcatatcaaatgtaatctttgtgataaaagcatatga |
27807 |
T |
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| Q |
201 |
cattaaatgggctcaacatgt |
221 |
Q |
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| T |
27806 |
cattaaatgggctcaacatgt |
27786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 61 - 219
Target Start/End: Original strand, 16110215 - 16110374
Alignment:
| Q |
61 |
attactgcacatgagccatgaaaagcacaaagaacaaattcaacacaaaagcttaatagaatttcgacccattaataaaagaaataaaggatccatgaaa |
160 |
Q |
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| T |
16110215 |
attattgcacatgggccatgaaaagcacaagagacaaaattagcaaaaaggcctgaaagaatttcgacccactaaggaaagaaataaaggatccatcaaa |
16110314 |
T |
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| Q |
161 |
agtgcatatcaaatgtaatctttgtgataaaagcatatgacat-taaatgggctcaacat |
219 |
Q |
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| T |
16110315 |
agtgcatctcaaatgtgatccttgtgataaaagcatatgacatctagatgagctcaacat |
16110374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 16109128 - 16109170
Alignment:
| Q |
10 |
caaaatgactaaaagattttaaaaggcaagacatcataaacaa |
52 |
Q |
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| T |
16109128 |
caaaatgactaaaaggctttaaaaggcaagacatcaaaaacaa |
16109170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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