View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16685_low_1 (Length: 847)
Name: NF16685_low_1
Description: NF16685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16685_low_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 794; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 794; E-Value: 0
Query Start/End: Original strand, 4 - 841
Target Start/End: Original strand, 3701870 - 3702707
Alignment:
| Q |
4 |
atttgtgaagaactgaattcagcaattgtgaaagaagatacaactttgagaactgcaattccagtgagacaaagagtagctgtttgtctatggagactag |
103 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
3701870 |
atttgtgaaaaattgaattcagcaattgtgaaagaagatacaactttgagaactgcaattccagtgagacaaagagtagctgtttgtctatggagattag |
3701969 |
T |
|
| Q |
104 |
caacaggtgatcctcttagcattgtttcaaaaaggtttggtttaggtatatcaacttgtcataaacttgttcttgaagtttgcactgctattaaaactgt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3701970 |
caacaggtgatcctcttagcattgtttcaaaaaggtttggtttaggtatatcaacttgtcataaacttgttcttgaagtttgcactgctattaaaactgt |
3702069 |
T |
|
| Q |
204 |
tcttatgcctaagtatcttcaatggcctaatgaaacttctttgagaaaaactaaaaatgagtttgagggtatgtcaggtattccaaatgttgtagggtcc |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3702070 |
tcttatgcctaagtatcttcaatggcctaatgaaacttctttgagaaaaattaagaatgagtttgagggtatgtcaggtattccaaatgttgtagggtcc |
3702169 |
T |
|
| Q |
304 |
atgtatacatcacatgttccaattatagctcctaagattagtgttgctgattattttaacaagagacatactgagaggaatcaaaagacttcatattcaa |
403 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
3702170 |
atgtatacatcacatgttccaatcatagctcctaagattagtgttgctgattattttaacagaagacatactgagaggaatcaaaagacttcatattcaa |
3702269 |
T |
|
| Q |
404 |
taactgttcaaggagttgttgatacaaatggtgttttcactgatgtttgtattggttggcctggttcaatgcctgatgatcaagtgttagaaaaatcagc |
503 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3702270 |
taactgttcaaggtgttgttgatacaaatggtgttttcactgatgtttgtattggttggcctggttcaatgcctgatgatcaagtgttagaaaaatcagc |
3702369 |
T |
|
| Q |
504 |
actttttcaaagggctaataatggaggacttctcagaggtgtttggattgttggtagttcagggtatcctttaatggattgggttttagtaccttatact |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3702370 |
actttttcaaagggctaataatggaggacttctcagaggtgtttggattgttggtagttcagggtatcctttaatggattgggttttagtaccttatact |
3702469 |
T |
|
| Q |
604 |
caacaaaatcttacttggacacaacatggtttcaatgagaagattggtgagatacaaaaagttgctaaagatgcatttgctagattgaaaggtaggtggt |
703 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3702470 |
caacaaaatcttacttggacacaacatggtttcaatgaaaagattggtgagatacaaaaagttgctaaagatgcatttgctagattgaaaggtaggtggt |
3702569 |
T |
|
| Q |
704 |
cttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgcataacatttgtgagatgaaaggcgagaa |
803 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
3702570 |
cttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgcataacatttgtgagatgaaaggtgagaa |
3702669 |
T |
|
| Q |
804 |
aatggatcctgaacttatggttgatattgttgatgatg |
841 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3702670 |
aatggatcctgaacttatggttgatattgttgatgatg |
3702707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 789; E-Value: 0
Query Start/End: Original strand, 1 - 841
Target Start/End: Original strand, 3698179 - 3699019
Alignment:
| Q |
1 |
ttgatttgtgaagaactgaattcagcaattgtgaaagaagatacaactttgagaactgcaattccagtgagacaaagagtagctgtttgtctatggagac |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3698179 |
ttgatttgtgaagaattgaattcagcaattgtgaaagaagatacaactttgagaactgcaattccagtgagacaaagagtagctgtttgtctatggagat |
3698278 |
T |
|
| Q |
101 |
tagcaacaggtgatcctcttagcattgtttcaaaaaggtttggtttaggtatatcaacttgtcataaacttgttcttgaagtttgcactgctattaaaac |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698279 |
tagcaacaggtgatcctcttagaattgtttcaaaaaggtttggtttaggtatatcaacttgtcataaacttgttcttgaagtttgcactgctattaaaac |
3698378 |
T |
|
| Q |
201 |
tgttcttatgcctaagtatcttcaatggcctaatgaaacttctttgagaaaaactaaaaatgagtttgagggtatgtcaggtattccaaatgttgtaggg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3698379 |
tgttcttatgcctaagtatcttcaatggcctaatgaaacttctttgagaaaaattaaaaatgagtttgagggtatgtcaggtattccaaatgttgtaggg |
3698478 |
T |
|
| Q |
301 |
tccatgtatacatcacatgttccaattatagctcctaagattagtgttgctgattattttaacaagagacatactgagaggaatcaaaagacttcatatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698479 |
tccatgtatacatcacatgttccaattatagctcctaagattagtgttgctgcttattttaacaagagacatactgagaggaatcaaaagacttcatatt |
3698578 |
T |
|
| Q |
401 |
caataactgttcaaggagttgttgatacaaatggtgttttcactgatgtttgtattggttggcctggttcaatgcctgatgatcaagtgttagaaaaatc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698579 |
caataactgttcaaggagttgttgatacaaatggtgttttcactgatgtttgcattggttggcctggttcaatgcctgatgatcaagtgttagaaaaatc |
3698678 |
T |
|
| Q |
501 |
agcactttttcaaagggctaataatggaggacttctcagaggtgtttggattgttggtagttcagggtatcctttaatggattgggttttagtaccttat |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698679 |
agcactttttcaaagggctaataatggaggacttcttaaaggtgtttggattgttggaagttcagggtatcctttaatggattgggttttagtaccttat |
3698778 |
T |
|
| Q |
601 |
actcaacaaaatcttacttggacacaacatggtttcaatgagaagattggtgagatacaaaaagttgctaaagatgcatttgctagattgaaaggtaggt |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698779 |
actcaacaaaatcttacttggacacaacatggtttcaatgagaagattggtgagatacaaaaagttgctaaagatgcatttgctagattgaaaggtaggt |
3698878 |
T |
|
| Q |
701 |
ggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgcataacatttgtgagatgaaaggcga |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3698879 |
ggtcttgtttgcagaaaaggactgaagtgaagctacaagatttgcctgttgtacttggtgcttgttgtgttttgcataacatttgtgagatgaaaggtga |
3698978 |
T |
|
| Q |
801 |
gaaaatggatcctgaacttatggttgatattgttgatgatg |
841 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698979 |
gaaaatggatcctgaacttatggttgatattgttgatgatg |
3699019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 3e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 577 - 791
Target Start/End: Original strand, 17602680 - 17602894
Alignment:
| Q |
577 |
atggattgggttttagtaccttatactcaacaaaatcttacttggacacaacatggtttcaatgagaagattggtgagatacaaaaagttgctaaagatg |
676 |
Q |
| |
|
||||||||||||||||| || |||| || |||||||| || |||||||||||||| || ||||||| |||||||| || | ||| ||| |||||||| |
|
|
| T |
17602680 |
atggattgggttttagtgccatataagcaccaaaatctgacgtggacacaacatggatttaatgagagaattggtgaaattgagaaaattggtaaagatg |
17602779 |
T |
|
| Q |
677 |
catttgctagattgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgca |
776 |
Q |
| |
|
| ||| ||| ||||||||||||||| |||||| |||||||||||||| | ||| | |||||||| ||||||| ||| ||||||||||||| | || |
|
|
| T |
17602780 |
cttttagtaggttgaaaggtaggtgggggtgtttgaagaaaaggactgaaattaagttgcaagatttacctgttgttcttggtgcttgttgtgtgcttca |
17602879 |
T |
|
| Q |
777 |
taacatttgtgagat |
791 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
17602880 |
taatatttgtgagat |
17602894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 397 - 475
Target Start/End: Original strand, 17602503 - 17602581
Alignment:
| Q |
397 |
tattcaataactgttcaaggagttgttgatacaaatggtgttttcactgatgtttgtattggttggcctggttcaatgc |
475 |
Q |
| |
|
|||||| ||||||||||||| || || ||| || |||||||| |||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
17602503 |
tattcagtaactgttcaaggtgtggtaaatagtaaaggtgtttttactgatgtgtgtataggttggcctggctcaatgc |
17602581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 689 - 793
Target Start/End: Complemental strand, 52250869 - 52250765
Alignment:
| Q |
689 |
tgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgcataacatttgtga |
788 |
Q |
| |
|
||||||| |||||||||||||||||||| |||| || |||||| || | || ||||||| || ||| |||||||||||||||||||||| |||||||| |
|
|
| T |
52250869 |
tgaaaggaaggtggtcttgtttgcagaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtga |
52250770 |
T |
|
| Q |
789 |
gatga |
793 |
Q |
| |
|
|||| |
|
|
| T |
52250769 |
aatga |
52250765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 665 - 793
Target Start/End: Complemental strand, 52262535 - 52262407
Alignment:
| Q |
665 |
ttgctaaagatgcatttgctagattgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttg-tgctt |
763 |
Q |
| |
|
||||||||||||||||||| || ||||||| |||||||| |||||||| || ||||| || ||||| || | ||||||||| || || | ||||| |
|
|
| T |
52262535 |
ttgctaaagatgcatttgcaaggctgaaagggaggtggtcctgtttgcaaaagaggacagaggtgaaaattgaggatttgcctaa-gattttaggtgctt |
52262437 |
T |
|
| Q |
764 |
gttgtgttttgcataacatttgtgagatga |
793 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |
|
|
| T |
52262436 |
gttgtgttttgcataatatttgtgagatga |
52262407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 52251470 - 52251370
Alignment:
| Q |
85 |
gtttgtctatggagactagcaacaggtgatcctcttagcattgtttcaaaaaggtttggtttaggtatatcaacttgtcataaacttgttcttgaagttt |
184 |
Q |
| |
|
|||||| | |||||||| || || ||||||||||| || | |||||||| ||||| ||||| |||||||| || |||||||| || |||||||| |||| |
|
|
| T |
52251470 |
gtttgtatctggagactcgccaccggtgatcctctaaggctggtttcaaagaggttcggtttgggtatatccacctgtcataagctggttcttgaggttt |
52251371 |
T |
|
| Q |
185 |
g |
185 |
Q |
| |
|
| |
|
|
| T |
52251370 |
g |
52251370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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