View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16685_low_3 (Length: 515)

Name: NF16685_low_3
Description: NF16685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16685_low_3
NF16685_low_3
[»] chr6 (7 HSPs)
chr6 (383-509)||(33846370-33846496)
chr6 (383-509)||(33846882-33847008)
chr6 (121-201)||(33846121-33846201)
chr6 (121-201)||(33847177-33847257)
chr6 (270-355)||(33846270-33846349)
chr6 (270-355)||(33847029-33847108)
chr6 (154-200)||(15339446-15339492)
[»] chr1 (5 HSPs)
chr1 (382-502)||(10040054-10040174)
chr1 (270-355)||(10040194-10040279)
chr1 (145-201)||(10040348-10040405)
chr1 (3-53)||(33460239-33460289)
chr1 (3-53)||(48171790-48171840)
[»] chr5 (6 HSPs)
chr5 (382-509)||(11893964-11894091)
chr5 (270-355)||(28086119-28086204)
chr5 (270-355)||(11893859-11893944)
chr5 (145-201)||(28086273-28086329)
chr5 (145-201)||(11893737-11893793)
chr5 (382-424)||(28086057-28086099)
[»] chr2 (6 HSPs)
chr2 (382-509)||(562397-562524)
chr2 (1-117)||(38262883-38262999)
chr2 (297-355)||(562319-562377)
chr2 (145-201)||(562181-562237)
chr2 (3-53)||(26845535-26845585)
chr2 (3-60)||(1353156-1353213)
[»] chr7 (5 HSPs)
chr7 (118-196)||(12543380-12543458)
chr7 (156-200)||(7744523-7744567)
chr7 (3-60)||(10017947-10018004)
chr7 (3-53)||(17813985-17814035)
chr7 (23-60)||(43511224-43511261)
[»] chr8 (5 HSPs)
chr8 (117-200)||(24917423-24917506)
chr8 (155-200)||(1080887-1080932)
chr8 (5-52)||(23871011-23871058)
chr8 (3-53)||(18935062-18935112)
chr8 (3-53)||(18935402-18935452)
[»] chr3 (1 HSPs)
chr3 (116-200)||(53281562-53281647)
[»] scaffold0400 (1 HSPs)
scaffold0400 (3-53)||(9588-9638)
[»] scaffold0365 (1 HSPs)
scaffold0365 (3-53)||(10231-10281)
[»] chr4 (1 HSPs)
chr4 (3-45)||(5665797-5665839)


Alignment Details
Target: chr6 (Bit Score: 119; Significance: 1e-60; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 383 - 509
Target Start/End: Original strand, 33846370 - 33846496
Alignment:
Q  383 caacatagacccactgactgcacatccatgctccttcaccactaccactgttgctcccgtcgcacctgcgccccatcctccttcatcttgtttcccatct 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33846370 caacatagacccactgactgcacatccatgctccttcaccactaccactgttgctcccgtcgcacctgcgccccatcctccttcatcttgtttcccatct 33846469  T
Q  483 ccgacgacacaaacctcttcatctctg 509  Q
    ||||| |||||||||||||| ||||||    
T  33846470 ccgacaacacaaacctcttcttctctg 33846496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 383 - 509
Target Start/End: Complemental strand, 33847008 - 33846882
Alignment:
Q  383 caacatagacccactgactgcacatccatgctccttcaccactaccactgttgctcccgtcgcacctgcgccccatcctccttcatcttgtttcccatct 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33847008 caacatagacccactgactgcacatccatgctccttcaccactaccactgttgctcccgtcgcacctgcgccccatcctccttcatcttgtttcccatct 33846909  T
Q  483 ccgacgacacaaacctcttcatctctg 509  Q
    ||||| |||||||||||||| ||||||    
T  33846908 ccgacaacacaaacctcttcttctctg 33846882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 121 - 201
Target Start/End: Original strand, 33846121 - 33846201
Alignment:
Q  121 aaatgattcatgtacaccctttcttgtacaccttcatatacaccccttatgtggcatgggtattttagaaatttcacacaa 201  Q
    |||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33846121 aaatgattcatgcacaccctttcatgtacaccttcatatacacctcttatgtggcatgggtattttagaaatttcacacaa 33846201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 121 - 201
Target Start/End: Complemental strand, 33847257 - 33847177
Alignment:
Q  121 aaatgattcatgtacaccctttcttgtacaccttcatatacaccccttatgtggcatgggtattttagaaatttcacacaa 201  Q
    |||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33847257 aaatgattcatgcacaccctttcatgtacaccttcatatacacctcttatgtggcatgggtattttagaaatttcacacaa 33847177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 270 - 355
Target Start/End: Original strand, 33846270 - 33846349
Alignment:
Q  270 aactcaccagcctccaccactcaccggccaccaccgccgcacccttttgttccatacccccaaatacatcctcgtgtggcctttca 355  Q
    |||||||| ||||||||||||||| |||||||      ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33846270 aactcaccggcctccaccactcactggccacc------gcacccttttgttccatactcccaaatacatcctcgtgtggcctttca 33846349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 270 - 355
Target Start/End: Complemental strand, 33847108 - 33847029
Alignment:
Q  270 aactcaccagcctccaccactcaccggccaccaccgccgcacccttttgttccatacccccaaatacatcctcgtgtggcctttca 355  Q
    |||||||| ||||||||||||||| |||||||      ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33847108 aactcaccggcctccaccactcactggccacc------gcacccttttgttccatactcccaaatacatcctcgtgtggcctttca 33847029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 15339446 - 15339492
Alignment:
Q  154 tcatatacaccccttatgtggcatgggtattttagaaatttcacaca 200  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||    
T  15339446 tcatatacacccgttatgtggcatgggtattttggaaatttcacaca 15339492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 382 - 502
Target Start/End: Complemental strand, 10040174 - 10040054
Alignment:
Q  382 gcaacatagacccactgactgcacatccatgctccttcaccactaccactgttgctcccgtcgcacctgcgccccatcctccttcatcttgtttcccatc 481  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10040174 gcaacatagacccactgactgcacatccatgctccttcaccactaccattgttgctcccgtcgcacctgcgccccatcctccttcatcttgtttcccatc 10040075  T
Q  482 tccgacgacacaaacctcttc 502  Q
    |||||||||||||||||||||    
T  10040074 tccgacgacacaaacctcttc 10040054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 270 - 355
Target Start/End: Complemental strand, 10040279 - 10040194
Alignment:
Q  270 aactcaccagcctccaccactcaccggccaccaccgccgcacccttttgttccatacccccaaatacatcctcgtgtggcctttca 355  Q
    |||||||| |||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10040279 aactcaccggcctccaccactcaccggccaccgtcgccgcacccttttgttccatactcccaaatacatcctcgtgtggcctttca 10040194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 10040405 - 10040348
Alignment:
Q  145 tgtacaccttcatatacacccc-ttatgtggcatgggtattttagaaatttcacacaa 201  Q
    |||||||||||||||||||||| |||| || |||| ||||||||||||||||||||||    
T  10040405 tgtacaccttcatatacacccccttatatgacatgagtattttagaaatttcacacaa 10040348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 33460239 - 33460289
Alignment:
Q  3 aaacataagggactagcttgaaacttaaaataaacataagagaccaaacat 53  Q
    ||||||||||||| | |||||||  |||||||||||||||||| |||||||    
T  33460239 aaacataagggaccaacttgaaaactaaaataaacataagagatcaaacat 33460289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 48171790 - 48171840
Alignment:
Q  3 aaacataagggactagcttgaaacttaaaataaacataagagaccaaacat 53  Q
    |||||||| |||| | |||||||| ||||||||||||||| ||||||||||    
T  48171790 aaacataaaggaccaacttgaaacctaaaataaacataagggaccaaacat 48171840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 382 - 509
Target Start/End: Original strand, 11893964 - 11894091
Alignment:
Q  382 gcaacatagacccactgactgcacatccatgctccttcaccactaccactgttgctcccgtcgcacctgcgccccatcctccttcatcttgtttcccatc 481  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11893964 gcaacacagacccactgattgcacatccatgctccttcaccactaccactgttgctcccgtcgcacctgcgccccatcctccttcgtcttgtttcccatc 11894063  T
Q  482 tccgacgacacaaacctcttcatctctg 509  Q
    ||||||||||||||||||||| ||||||    
T  11894064 tccgacgacacaaacctcttcttctctg 11894091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 270 - 355
Target Start/End: Complemental strand, 28086204 - 28086119
Alignment:
Q  270 aactcaccagcctccaccactcaccggccaccaccgccgcacccttttgttccatacccccaaatacatcctcgtgtggcctttca 355  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28086204 aactcaccggcctccaccactcaccggccaccaccgccgcacccttttgttccatacccccaagtacatcctcgtgtggcctttca 28086119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 270 - 355
Target Start/End: Original strand, 11893859 - 11893944
Alignment:
Q  270 aactcaccagcctccaccactcaccggccaccaccgccgcacccttttgttccatacccccaaatacatcctcgtgtggcctttca 355  Q
    |||||| | ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||    
T  11893859 aactcatcggcctccaccacccaccggccaccaccgccacacccttttgttccatacccccaaatacacccttgtgtggcctttca 11893944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 28086329 - 28086273
Alignment:
Q  145 tgtacaccttcatatacaccccttatgtggcatgggtattttagaaatttcacacaa 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28086329 tgtacaccttcatatacaccccttatgtggcatgggtattttagaaatttcacacaa 28086273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 11893737 - 11893793
Alignment:
Q  145 tgtacaccttcatatacaccccttatgtggcatgggtattttagaaatttcacacaa 201  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11893737 tgtacaccctcatatacaccccttatgtggcatgggtattttggaaatttcacacaa 11893793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 28086099 - 28086057
Alignment:
Q  382 gcaacatagacccactgactgcacatccatgctccttcaccac 424  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  28086099 gcaacatagacccactgactgcacatccatgctccttcaccac 28086057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 382 - 509
Target Start/End: Original strand, 562397 - 562524
Alignment:
Q  382 gcaacatagacccactgactgcacatccatgctccttcaccactaccactgttgctcccgtcgcacctgcgccccatcctccttcatcttgtttcccatc 481  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  562397 gcaacatagatccactgactgcacatccatgctccttcaccactaccattgctgctcccgtcgcacctgcgccccatcctccttcatcttgtttcccatc 562496  T
Q  482 tccgacgacacaaacctcttcatctctg 509  Q
    ||||||||||||||||||||| ||||||    
T  562497 tccgacgacacaaacctcttcttctctg 562524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 38262883 - 38262999
Alignment:
Q  1 tgaaacataagggactagcttgaaacttaaaataaacataagagaccaaacatacgattatggcattattttatttagaagtttagtttggctttaaaat 100  Q
    ||||||||||| || ||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||| |||| |||| ||||    
T  38262883 tgaaacataagagattagcttgaaacttaaaataaacatatgagaccaaacataaaattatggcattattttatttagaagtttactttgactttgaaat 38262982  T
Q  101 actatacattttgatat 117  Q
    |||||||||||||||||    
T  38262983 actatacattttgatat 38262999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 297 - 355
Target Start/End: Original strand, 562319 - 562377
Alignment:
Q  297 ccaccaccgccgcacccttttgttccatacccccaaatacatcctcgtgtggcctttca 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  562319 ccaccaccgccgcacccttttgttccatacccccaaatacatcctcgtgtggcctttca 562377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 562181 - 562237
Alignment:
Q  145 tgtacaccttcatatacaccccttatgtggcatgggtattttagaaatttcacacaa 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  562181 tgtacaccttcatatacaccccttatgtggcatgggtattttagaaatttcacacaa 562237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 26845535 - 26845585
Alignment:
Q  3 aaacataagggactagcttgaaacttaaaataaacataagagaccaaacat 53  Q
    ||||||||||||| | ||| |||| ||||||||||||||| ||||||||||    
T  26845535 aaacataagggaccaacttaaaacctaaaataaacataagggaccaaacat 26845585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 1353156 - 1353213
Alignment:
Q  3 aaacataagggactagcttgaaacttaaaataaacataagagaccaaacatacgatta 60  Q
    ||||||||| ||| | ||| |||| |||||||||||| ||||||||||||||| ||||    
T  1353156 aaacataagagaccaacttaaaacctaaaataaacatgagagaccaaacatacaatta 1353213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 118 - 196
Target Start/End: Complemental strand, 12543458 - 12543380
Alignment:
Q  118 ggaaaatgattcatgtacaccctttcttgtacaccttcatatacaccccttatgtggcatgggtattttagaaatttca 196  Q
    |||||||||| ||||||||||||||| ||||||||  |||||||| ||||||||||||||||||||||| |||||||||    
T  12543458 ggaaaatgatccatgtacaccctttcatgtacacccccatatacaacccttatgtggcatgggtattttggaaatttca 12543380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 7744523 - 7744567
Alignment:
Q  156 atatacaccccttatgtggcatgggtattttagaaatttcacaca 200  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  7744523 atatacaccccttatgtggcatgggtattttggaaatttcacaca 7744567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 10017947 - 10018004
Alignment:
Q  3 aaacataagggactagcttgaaacttaaaataaacataagagaccaaacatacgatta 60  Q
    ||||||||| ||| | ||| |||| |||||||||||||||||||||||||||| ||||    
T  10017947 aaacataagagaccaacttaaaacctaaaataaacataagagaccaaacatacaatta 10018004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 17814035 - 17813985
Alignment:
Q  3 aaacataagggactagcttgaaacttaaaataaacataagagaccaaacat 53  Q
    ||||||||| ||| | |||||||| |||||||||||||||||| |||||||    
T  17814035 aaacataagagaccaacttgaaacctaaaataaacataagagatcaaacat 17813985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 43511224 - 43511261
Alignment:
Q  23 aaacttaaaataaacataagagaccaaacatacgatta 60  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  43511224 aaacttaaaataaacataagagatcaaacatacaatta 43511261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 117 - 200
Target Start/End: Original strand, 24917423 - 24917506
Alignment:
Q  117 tggaaaatgattcatgtacaccctttcttgtacaccttcatatacaccccttatgtggcatgggtattttagaaatttcacaca 200  Q
    ||||||||||||  |  |||| ||||| |||||| |  |||||||||||||||||||||||||||||||| |||||||||||||    
T  24917423 tggaaaatgattggtagacacactttcatgtacatccccatatacaccccttatgtggcatgggtattttggaaatttcacaca 24917506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 1080887 - 1080932
Alignment:
Q  155 catatacaccccttatgtggcatgggtattttagaaatttcacaca 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  1080887 catatacaccccttatgtggcatgggtattttggaaatttcacaca 1080932  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 23871058 - 23871011
Alignment:
Q  5 acataagggactagcttgaaacttaaaataaacataagagaccaaaca 52  Q
    ||||||||||| | ||||||||| ||||||||||||||||||||||||    
T  23871058 acataagggacaaacttgaaactcaaaataaacataagagaccaaaca 23871011  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 18935112 - 18935062
Alignment:
Q  3 aaacataagggactagcttgaaacttaaaataaacataagagaccaaacat 53  Q
    ||||| ||||||| | ||| |||||||||||||||||||||||||||||||    
T  18935112 aaacaaaagggaccaacttaaaacttaaaataaacataagagaccaaacat 18935062  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 18935402 - 18935452
Alignment:
Q  3 aaacataagggactagcttgaaacttaaaataaacataagagaccaaacat 53  Q
    ||||||||||||| | | |||||| ||||||||||||||| ||||||||||    
T  18935402 aaacataagggaccaacatgaaacctaaaataaacataagggaccaaacat 18935452  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 53281647 - 53281562
Alignment:
Q  116 atggaaaatgattcatgtacaccctttcttgtacaccttcatatacacccc-ttatgtggcatgggtattttagaaatttcacaca 200  Q
    |||||||||||||  |  |||| ||||| | ||||||  |||||||||||| |||||||||||||||||||| |||||||||||||    
T  53281647 atggaaaatgattggtagacacactttcatctacacccccatatacacccccttatgtggcatgggtattttggaaatttcacaca 53281562  T

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Target: scaffold0400 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 9638 - 9588
Alignment:
Q  3 aaacataagggactagcttgaaacttaaaataaacataagagaccaaacat 53  Q
    ||||||||||||| | ||| ||| ||||||||||||||||||| |||||||    
T  9638 aaacataagggaccatcttaaaaattaaaataaacataagagatcaaacat 9588  T

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Target: scaffold0365 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 10281 - 10231
Alignment:
Q  3 aaacataagggactagcttgaaacttaaaataaacataagagaccaaacat 53  Q
    ||||||||||||| | ||| ||| ||||||||||||||||||| |||||||    
T  10281 aaacataagggaccatcttaaaaattaaaataaacataagagatcaaacat 10231  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 5665797 - 5665839
Alignment:
Q  3 aaacataagggactagcttgaaacttaaaataaacataagaga 45  Q
    ||||||||||||| | |||||||| ||||||||||||||||||    
T  5665797 aaacataagggacaaacttgaaacctaaaataaacataagaga 5665839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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