View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16685_low_4 (Length: 448)
Name: NF16685_low_4
Description: NF16685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16685_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 13 - 431
Target Start/End: Complemental strand, 27269115 - 27268696
Alignment:
| Q |
13 |
aaaataacccaaagatggcactgcttagctgtgcaaaacggggacttcctctttgcacgagtaatgccatggccaaaacaaaagcagcagaagccacaga |
112 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27269115 |
aaaatagcccaaagatggcactgcttagctgtgcaaaacggggacttcctctttgcacgagtaatgccatggccaaaacaaaagcagcagaagccacaga |
27269016 |
T |
|
| Q |
113 |
aacatcaatatgaccatgatacctggcatgaatcaaaaatagatactgataaatcagcaagcaacatccatcagtcttacatacctgaagttatgtaagt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27269015 |
aacatcaatatgaccatgatacctggcatgaatcaaaaatagatactaataaatcagcaagcaacatccatcagtcttacatacctgatgttatgtaagt |
27268916 |
T |
|
| Q |
213 |
aaaaatttgtttaagaggttctctagtatctctatactaattttctcacgatatagataaaagcnnnnnnnnctt-aaaataataggaaaatacacatta |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
27268915 |
aaaaatttgtttaagaggttctctagtatctctatactaattttctcacgatatagataaaagcaaaaaaaacttaaaaataataggaaaatacacatta |
27268816 |
T |
|
| Q |
312 |
ccccagaaaaacagattgccctaaggactaaagttaaacctaagtaaatggtttatgttaccaccaaatcgtatcatgaagaaggaccaaacaattgagg |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27268815 |
ccccagaaaaacagattgccctaaggactaaagttaaacctaagtaaatggtttatgttaccaccaaatcggatcatgaagaaggaccaaacaattgagg |
27268716 |
T |
|
| Q |
412 |
ataattgtgaaagggagatt |
431 |
Q |
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|||||||||||||||||||| |
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| T |
27268715 |
ataattgtgaaagggagatt |
27268696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 30495357 - 30495241
Alignment:
| Q |
13 |
aaaataacccaaagatggcactgcttagctgtgcaaaacggggacttcctctttgcacgagtaatgccatggccaaaacaaaagcagcagaagccacaga |
112 |
Q |
| |
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||||||||||||||||||| |||||||||| ||||||||| ||||||||| |||||| |||||||||| |||||||||||||||||||||||| |||| | |
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| T |
30495357 |
aaaataacccaaagatggctctgcttagctatgcaaaacgaggacttcctttttgcatgagtaatgccgtggccaaaacaaaagcagcagaagacacaaa |
30495258 |
T |
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| Q |
113 |
aacatcaatatgaccat |
129 |
Q |
| |
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|| |||||||| ||||| |
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| T |
30495257 |
aagatcaatattaccat |
30495241 |
T |
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