View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16685_low_9 (Length: 298)

Name: NF16685_low_9
Description: NF16685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16685_low_9
NF16685_low_9
[»] chr1 (15 HSPs)
chr1 (1-286)||(3701485-3701770)
chr1 (56-206)||(3697505-3697655)
chr1 (216-280)||(28574444-28574508)
chr1 (216-280)||(28598456-28598520)
chr1 (1-60)||(3698023-3698082)
chr1 (216-275)||(3468215-3468274)
chr1 (216-281)||(21431674-21431739)
chr1 (228-287)||(13654468-13654527)
chr1 (221-287)||(10186567-10186633)
chr1 (221-287)||(16051337-16051403)
chr1 (216-275)||(43358890-43358949)
chr1 (221-287)||(19310965-19311031)
chr1 (221-286)||(17414555-17414620)
chr1 (221-287)||(44524017-44524085)
chr1 (221-279)||(35653247-35653305)
[»] chr3 (21 HSPs)
chr3 (210-280)||(10584851-10584921)
chr3 (216-280)||(4049955-4050019)
chr3 (216-279)||(49784633-49784696)
chr3 (210-280)||(10591288-10591358)
chr3 (210-280)||(10672931-10673001)
chr3 (216-280)||(1302237-1302301)
chr3 (216-280)||(4055089-4055153)
chr3 (216-280)||(5458004-5458068)
chr3 (216-280)||(5481481-5481545)
chr3 (216-280)||(6852945-6853009)
chr3 (216-280)||(6858048-6858112)
chr3 (216-280)||(8464897-8464961)
chr3 (216-280)||(33702592-33702656)
chr3 (216-275)||(33703447-33703506)
chr3 (227-280)||(8458470-8458523)
chr3 (216-280)||(31076395-31076459)
chr3 (216-280)||(31081500-31081564)
chr3 (225-280)||(18024173-18024228)
chr3 (210-285)||(10678039-10678116)
chr3 (224-286)||(20891182-20891244)
chr3 (215-287)||(29827550-29827621)
[»] chr2 (7 HSPs)
chr2 (215-288)||(20892334-20892407)
chr2 (216-278)||(14917377-14917439)
chr2 (216-280)||(17720519-17720583)
chr2 (216-280)||(45120534-45120598)
chr2 (216-287)||(42780320-42780391)
chr2 (211-281)||(30283442-30283512)
chr2 (221-287)||(716406-716472)
[»] scaffold0223 (1 HSPs)
scaffold0223 (216-280)||(2012-2076)
[»] chr8 (10 HSPs)
chr8 (216-280)||(14314904-14314968)
chr8 (216-280)||(14318608-14318672)
chr8 (216-280)||(18494169-18494233)
chr8 (216-280)||(26986982-26987046)
chr8 (216-280)||(34108378-34108442)
chr8 (216-275)||(43956848-43956907)
chr8 (216-280)||(26981868-26981932)
chr8 (216-280)||(10340960-10341024)
chr8 (238-287)||(25953161-25953210)
chr8 (221-281)||(18608642-18608701)
[»] chr7 (10 HSPs)
chr7 (216-280)||(12851823-12851887)
chr7 (216-280)||(12856936-12857000)
chr7 (221-287)||(4181389-4181455)
chr7 (223-287)||(5440286-5440350)
chr7 (223-287)||(5449296-5449360)
chr7 (216-280)||(26051168-26051232)
chr7 (216-280)||(26056281-26056345)
chr7 (216-280)||(26060527-26060591)
chr7 (216-280)||(26065640-26065704)
chr7 (221-288)||(37459848-37459915)
[»] chr5 (9 HSPs)
chr5 (216-287)||(13556290-13556361)
chr5 (211-280)||(39909100-39909169)
chr5 (216-284)||(2023101-2023169)
chr5 (216-280)||(9872417-9872481)
chr5 (216-280)||(9877532-9877596)
chr5 (221-279)||(35368895-35368953)
chr5 (211-280)||(39903987-39904056)
chr5 (221-281)||(4555772-4555832)
chr5 (221-274)||(43540779-43540832)
[»] chr6 (5 HSPs)
chr6 (213-287)||(21936672-21936746)
chr6 (213-287)||(24509844-24509918)
chr6 (216-280)||(21275920-21275984)
chr6 (213-287)||(21937710-21937784)
chr6 (221-279)||(20752132-20752190)
[»] chr4 (12 HSPs)
chr4 (216-280)||(35091062-35091126)
chr4 (216-280)||(35096175-35096239)
chr4 (221-279)||(3409602-3409660)
chr4 (221-281)||(3424702-3424762)
chr4 (221-281)||(54859170-54859230)
chr4 (216-287)||(32429279-32429350)
chr4 (215-287)||(30019833-30019905)
chr4 (225-279)||(34128254-34128308)
chr4 (221-279)||(34279507-34279565)
chr4 (224-287)||(18670985-18671048)
chr4 (221-276)||(22118857-22118912)
chr4 (221-287)||(14643731-14643797)
[»] scaffold0006 (1 HSPs)
scaffold0006 (228-287)||(144229-144288)
[»] scaffold0005 (1 HSPs)
scaffold0005 (221-287)||(173495-173561)


Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 3701770 - 3701485
Alignment:
Q  1 cttcacccatagccttctctgtgaaccaccaccattagatataccactgttaacatcattttttctacgtctttttctgttatttgttgaagtagcagtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3701770 cttcacccatagccttctctgtgaaccaccaccattagatataccactgttaacatcattttttctatgtctttttctgttatttgttgaagtagcagtg 3701671  T
Q  101 ttgtttggattgttcatctggtcaaatgaattttgacgtaaggtataaacgtatgaaagtgattctgggtctgcaaaagtcccaagtttcataaatatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3701670 ttgtttggattgttcatctggtcaaatgaattttgacgtaaggtataaacgtatgaaagtgattctgggtctgcaaaagtcccaagtttcataaatacta 3701571  T
Q  201 gaaaattcgattttaaactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttg 286  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3701570 gaaaattcgattttaaactcaggcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttg 3701485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 56 - 206
Target Start/End: Complemental strand, 3697655 - 3697505
Alignment:
Q  56 tcattttttctacgtctttttctgttatttgttgaagtagcagtgttgtttggattgttcatctggtcaaatgaattttgacgtaaggtataaacgtatg 155  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  3697655 tcattttttctacgtctttttctgatatttgttgaagtagcagtgttgtttggatcgttcatctggtcaaatgaattttgaagtaaggtataaacgtatg 3697556  T
Q  156 aaagtgattctgggtctgcaaaagtcccaagtttcataaatattagaaaat 206  Q
    |||||||||||||||||||||||||    ||||||||||||| || |||||    
T  3697555 aaagtgattctgggtctgcaaaagttgggagtttcataaatactaaaaaat 3697505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 28574444 - 28574508
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  28574444 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacc 28574508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 28598456 - 28598520
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  28598456 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacc 28598520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 3698082 - 3698023
Alignment:
Q  1 cttcacccatagccttctctgtgaaccaccaccattagatataccactgttaacatcatt 60  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3698082 cttcacccaaagccttctctgtgaaccaccaccattagatttaccactgttaacatcatt 3698023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 216 - 275
Target Start/End: Original strand, 3468215 - 3468274
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaa 275  Q
    |||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  3468215 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaa 3468274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 21431739 - 21431674
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacaccc 281  Q
    |||| |||||||||||||||| |||||||||||||||| |||| |||||||||||||||| |||||    
T  21431739 aactaatgcccaaatgtcaagcatttatagtgcattatatgacccttcacatgagagaaagcaccc 21431674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 228 - 287
Target Start/End: Original strand, 13654468 - 13654527
Alignment:
Q  228 aatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttga 287  Q
    |||| ||||||||||||||||||||| |||| |||||||||||||||||||||| |||||    
T  13654468 aatgccaagtatttatagtgcattatatgacccttcacatgagagaaaacacccctttga 13654527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 287
Target Start/End: Complemental strand, 10186633 - 10186567
Alignment:
Q  221 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttga 287  Q
    |||||||||||||||  |||||||||||||||| |||| |||||||||||||||| ||||| |||||    
T  10186633 atgcccaaatgtcaaacatttatagtgcattatatgacccttcacatgagagaaagcacccatttga 10186567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 287
Target Start/End: Original strand, 16051337 - 16051403
Alignment:
Q  221 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttga 287  Q
    |||||||||||||||  |||||||||||||||| ||||  |||||||||| ||||||||||||||||    
T  16051337 atgcccaaatgtcaaacatttatagtgcattatatgaccattcacatgagtgaaaacacccttttga 16051403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 275
Target Start/End: Original strand, 43358890 - 43358949
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaa 275  Q
    |||| ||||||||||| |||| ||||||||||||||||  ||||||||||||||||||||    
T  43358890 aactaatgcccaaatgccaagcatttatagtgcattataggactcttcacatgagagaaa 43358949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 221 - 287
Target Start/End: Original strand, 19310965 - 19311031
Alignment:
Q  221 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttga 287  Q
    |||||||||||||||  |||||||||||||||  |||| |||||||||||||||| ||||| |||||    
T  19310965 atgcccaaatgtcaaacatttatagtgcattacatgacccttcacatgagagaaagcacccctttga 19311031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 286
Target Start/End: Complemental strand, 17414620 - 17414555
Alignment:
Q  221 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttg 286  Q
    ||||||||||| |||| |||||||||||||||| ||||  ||||||||||||||| ||||| ||||    
T  17414620 atgcccaaatgccaagcatttatagtgcattatatgaccattcacatgagagaaaccacccatttg 17414555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 287
Target Start/End: Complemental strand, 44524085 - 44524017
Alignment:
Q  221 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcac--atgagagaaaacacccttttga 287  Q
    |||||||||||||||  |||||||||||||||| |||| ||||||  ||||| |||||||||| |||||    
T  44524085 atgcccaaatgtcaaacatttatagtgcattatatgacccttcacatatgagggaaaacacccatttga 44524017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 35653305 - 35653247
Alignment:
Q  221 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacac 279  Q
    ||||||||||||||||| ||||||  ||  ||| |||| ||||||||||||||||||||    
T  35653305 atgcccaaatgtcaagtgtttataaggctatatatgacccttcacatgagagaaaacac 35653247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 210 - 280
Target Start/End: Complemental strand, 10584921 - 10584851
Alignment:
Q  210 attttaaactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    ||||| |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  10584921 attttcaactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacc 10584851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 4049955 - 4050019
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  4049955 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacc 4050019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 216 - 279
Target Start/End: Original strand, 49784633 - 49784696
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacac 279  Q
    |||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  49784633 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacac 49784696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 210 - 280
Target Start/End: Complemental strand, 10591358 - 10591288
Alignment:
Q  210 attttaaactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    ||||| |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  10591358 attttcaactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 10591288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 210 - 280
Target Start/End: Complemental strand, 10673001 - 10672931
Alignment:
Q  210 attttaaactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    ||||| |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  10673001 attttcaactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 10672931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 1302301 - 1302237
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  1302301 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 1302237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 4055089 - 4055153
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  4055089 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 4055153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 5458068 - 5458004
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  5458068 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 5458004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 5481545 - 5481481
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  5481545 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 5481481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 6853009 - 6852945
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  6853009 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 6852945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 6858112 - 6858048
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  6858112 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaatcacc 6858048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 8464897 - 8464961
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  8464897 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 8464961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 33702656 - 33702592
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  33702656 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 33702592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 216 - 275
Target Start/End: Original strand, 33703447 - 33703506
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaa 275  Q
    |||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  33703447 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaa 33703506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 227 - 280
Target Start/End: Original strand, 8458470 - 8458523
Alignment:
Q  227 aaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  8458470 aaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacc 8458523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 31076459 - 31076395
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| |||||||||||||||| ||||||| |||||||| ||||||||||||||||||||| ||||    
T  31076459 aactaatgcccaaatgtcaagcatttataatgcattatatgactcttcacatgagagaaagcacc 31076395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 31081564 - 31081500
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| |||||||||||||||| ||||||| |||||||| ||||||||||||||||||||| ||||    
T  31081564 aactaatgcccaaatgtcaagcatttataatgcattatatgactcttcacatgagagaaagcacc 31081500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 225 - 280
Target Start/End: Complemental strand, 18024228 - 18024173
Alignment:
Q  225 ccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||||||||||| |||||||||||||||| |||| |||||||||||||||||||||    
T  18024228 ccaaatgtcaagcatttatagtgcattatatgacccttcacatgagagaaaacacc 18024173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 285
Target Start/End: Complemental strand, 10678116 - 10678039
Alignment:
Q  210 attttaaactcatgcccaaatgtcaagtatttatagtgcat--tatgtgactcttcacatgagagaaaacaccctttt 285  Q
    ||||| |||| |||||||||||||||| |||||||||||||  ||||||||||||||||||| ||||| |||| ||||    
T  10678116 attttcaactaatgcccaaatgtcaagcatttatagtgcattatatgtgactcttcacatgaaagaaagcaccttttt 10678039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 286
Target Start/End: Original strand, 20891182 - 20891244
Alignment:
Q  224 cccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttg 286  Q
    |||||||| |||| |||||||||||||||| |||| |||||||||||||||||||||| ||||    
T  20891182 cccaaatgccaagcatttatagtgcattatatgacccttcacatgagagaaaacacccctttg 20891244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 287
Target Start/End: Original strand, 29827550 - 29827621
Alignment:
Q  215 aaactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttga 287  Q
    ||||| ||||||||||| |||| ||||||| |||||||| ||||| ||||||||| ||||||||||| |||||    
T  29827550 aaactaatgcccaaatgccaagcatttataatgcattatatgact-ttcacatgatagaaaacacccctttga 29827621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 20892407 - 20892334
Alignment:
Q  215 aaactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttgat 288  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| | ||||||    
T  20892407 aaactaatgcccaaatgtcaagtatttatagtgcattatatgactcttcacacgagagaaaacactcatttgat 20892334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 278
Target Start/End: Complemental strand, 14917439 - 14917377
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaaca 278  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  14917439 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaaca 14917377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 17720583 - 17720519
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  17720583 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 17720519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 45120534 - 45120598
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  45120534 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 45120598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 216 - 287
Target Start/End: Original strand, 42780320 - 42780391
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttga 287  Q
    |||| |||||||| ||||||  |||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  42780320 aactaatgcccaactgtcaatcatttatagtgcattatatgactcttcacatgagagaaaacacccctttga 42780391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 281
Target Start/End: Complemental strand, 30283512 - 30283442
Alignment:
Q  211 ttttaaactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacaccc 281  Q
    |||| |||| ||||||||||| |||  |||||||||||||||| ||||||||||||||| |||||||||||    
T  30283512 ttttcaactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgaaagaaaacaccc 30283442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 287
Target Start/End: Original strand, 716406 - 716472
Alignment:
Q  221 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttga 287  Q
    ||||||||||| |||  |||||||||||||||| ||||  |||| ||||||||||||| || |||||    
T  716406 atgcccaaatgccaaacatttatagtgcattatatgacctttcatatgagagaaaacatccctttga 716472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 2076 - 2012
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  2076 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacc 2012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 14314968 - 14314904
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  14314968 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacc 14314904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 14318672 - 14318608
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  14318672 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacc 14318608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 18494233 - 18494169
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  18494233 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 18494169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 26987046 - 26986982
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  26987046 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 26986982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 34108378 - 34108442
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  34108378 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 34108442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 43956907 - 43956848
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaa 275  Q
    |||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  43956907 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaa 43956848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 26981932 - 26981868
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| |||||||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||    
T  26981932 aactaatgcccaaatgtcaaacatttatagtgcattatatgactcttcacatgagagaaagcacc 26981868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 10341024 - 10340960
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| ||||||||||| |||| |||||| ||||||||| ||||||||||||||||| ||| ||||    
T  10341024 aactaatgcccaaatgccaagcatttatggtgcattatatgactcttcacatgagaaaaagcacc 10340960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 287
Target Start/End: Complemental strand, 25953210 - 25953161
Alignment:
Q  238 atttatagtgcattatgtgactcttcacatgagagaaaacacccttttga 287  Q
    |||||||||||||||| ||||  ||||||||||||||||||||| |||||    
T  25953210 atttatagtgcattatatgaccattcacatgagagaaaacacccatttga 25953161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 18608701 - 18608642
Alignment:
Q  221 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacaccc 281  Q
    ||||| ||||| |||  |||| ||||||||||| |||| ||||||||||||||||||||||    
T  18608701 atgcctaaatgccaaacatttgtagtgcattatatgac-cttcacatgagagaaaacaccc 18608642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 12851823 - 12851887
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  12851823 aactaatgcccaaatgtcaagtatttatagtgcattatatgactcttcacatgagagaaagcacc 12851887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 12856936 - 12857000
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  12856936 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 12857000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 221 - 287
Target Start/End: Complemental strand, 4181455 - 4181389
Alignment:
Q  221 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttga 287  Q
    |||||||||||||||  |||||||||||||||| |||||||||| ||||||||||||||| ||||||    
T  4181455 atgcccaaatgtcaaacatttatagtgcattatatgactcttcatatgagagaaaacaccattttga 4181389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 5440350 - 5440286
Alignment:
Q  223 gcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttga 287  Q
    ||||||||| |||| |||||||||||||||| |||| |||||||||||||||||||||| |||||    
T  5440350 gcccaaatgccaagcatttatagtgcattatatgacccttcacatgagagaaaacacccatttga 5440286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 5449360 - 5449296
Alignment:
Q  223 gcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttga 287  Q
    ||||||||| |||| |||||||||||||||| |||| |||||||||||||||||||||| |||||    
T  5449360 gcccaaatgccaagcatttatagtgcattatatgacccttcacatgagagaaaacacccatttga 5449296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 26051168 - 26051232
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| ||||| |||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  26051168 aactaatgcctaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 26051232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 26056281 - 26056345
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| ||||| |||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  26056281 aactaatgcctaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 26056345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 26060527 - 26060591
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| ||||| |||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  26060527 aactaatgcctaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 26060591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 26065640 - 26065704
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| ||||| |||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  26065640 aactaatgcctaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 26065704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 221 - 288
Target Start/End: Complemental strand, 37459915 - 37459848
Alignment:
Q  221 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttgat 288  Q
    ||||||||||||||||||||||||||||||||| || |  ||||||||||||||||||| | ||||||    
T  37459915 atgcccaaatgtcaagtatttatagtgcattatatgtccattcacatgagagaaaacacgcatttgat 37459848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 216 - 287
Target Start/End: Complemental strand, 13556361 - 13556290
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttga 287  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| |||||    
T  13556361 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacccatttga 13556290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 39909100 - 39909169
Alignment:
Q  211 ttttaaactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  39909100 ttttcaactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 39909169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 2023101 - 2023169
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttt 284  Q
    |||| ||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||    
T  2023101 aactaatgcccatatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacccttt 2023169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 9872481 - 9872417
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  9872481 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 9872417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 9877596 - 9877532
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  9877596 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 9877532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 35368953 - 35368895
Alignment:
Q  221 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacac 279  Q
    |||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||    
T  35368953 atgcccaaatgtcaagcatttatagtgcattatatgacttttcacatgagagaaaacac 35368895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 39903987 - 39904056
Alignment:
Q  211 ttttaaactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| |||| ||||| |||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  39903987 ttttcaactaatgccaaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 39904056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 4555772 - 4555832
Alignment:
Q  221 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacaccc 281  Q
    |||||||||||||||| |||||||||||||||| ||||| || ||||||||||||||||||    
T  4555772 atgcccaaatgtcaagcatttatagtgcattatatgactattaacatgagagaaaacaccc 4555832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 43540832 - 43540779
Alignment:
Q  221 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaa 274  Q
    ||||||| ||| ||||||||||||||||||||| |||| |||||||||||||||    
T  43540832 atgcccagatgccaagtatttatagtgcattatatgacccttcacatgagagaa 43540779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 213 - 287
Target Start/End: Complemental strand, 21936746 - 21936672
Alignment:
Q  213 ttaaactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttga 287  Q
    ||||||| |||||||||||| ||| |||||||||||||||| |||| |||||||||||||||||||||| |||||    
T  21936746 ttaaactaatgcccaaatgttaagcatttatagtgcattatatgacccttcacatgagagaaaacacccctttga 21936672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 213 - 287
Target Start/End: Original strand, 24509844 - 24509918
Alignment:
Q  213 ttaaactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttga 287  Q
    ||||||| |||||||||||||||| |||||||||||||||| |||  |||||||||||||||||||||| |||||    
T  24509844 ttaaactaatgcccaaatgtcaagcatttatagtgcattatatgaaccttcacatgagagaaaacacccatttga 24509918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 21275920 - 21275984
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  21275920 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 21275984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 213 - 287
Target Start/End: Original strand, 21937710 - 21937784
Alignment:
Q  213 ttaaactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttga 287  Q
    ||||||| ||||||||||| |||  ||||||||||| |||| |||| ||||||||||||||||| |||| |||||    
T  21937710 ttaaactaatgcccaaatgccaaacatttatagtgcgttatatgacccttcacatgagagaaaatacccctttga 21937784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 20752190 - 20752132
Alignment:
Q  221 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacac 279  Q
    ||||| ||||| ||||||||||||||||||||  ||||  |||||||||||||||||||    
T  20752190 atgcctaaatgccaagtatttatagtgcattagatgacctttcacatgagagaaaacac 20752132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 35091062 - 35091126
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  35091062 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 35091126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 35096175 - 35096239
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 280  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  35096175 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 35096239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 3409660 - 3409602
Alignment:
Q  221 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacac 279  Q
    ||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||    
T  3409660 atgcccaaatgtcaaatatttatagtgcattatatgacccttcacatgagagaaaacac 3409602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 3424762 - 3424702
Alignment:
Q  221 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacaccc 281  Q
    |||||||||| |||| ||||||||||||||||| |||| ||||||||||||||||||||||    
T  3424762 atgcccaaatatcaaatatttatagtgcattatatgacccttcacatgagagaaaacaccc 3424702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 54859230 - 54859170
Alignment:
Q  221 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacaccc 281  Q
    |||||||||| ||||| |||||||||||||||| |||| ||||||||||||||||||||||    
T  54859230 atgcccaaatatcaagcatttatagtgcattatatgacccttcacatgagagaaaacaccc 54859170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 216 - 287
Target Start/End: Complemental strand, 32429350 - 32429279
Alignment:
Q  216 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttga 287  Q
    |||| |||| |||||| |||| |||||||||||||||| |||||||||| |||||||||||||||| |||||    
T  32429350 aactaatgcacaaatgccaagcatttatagtgcattatatgactcttcaaatgagagaaaacacccctttga 32429279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 287
Target Start/End: Complemental strand, 30019905 - 30019833
Alignment:
Q  215 aaactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttga 287  Q
    ||||| ||||||||||| |||  |||||||||||||||| |||| |||||||||||||||| ||||| |||||    
T  30019905 aaactaatgcccaaatgccaaacatttatagtgcattatatgacccttcacatgagagaaagcacccatttga 30019833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 34128308 - 34128254
Alignment:
Q  225 ccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacac 279  Q
    |||||||||||| |||||||||||||||| |||| |||||||| |||||||||||    
T  34128308 ccaaatgtcaagcatttatagtgcattatatgacccttcacattagagaaaacac 34128254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 34279565 - 34279507
Alignment:
Q  221 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacac 279  Q
    |||| |||||||| || |||||||||||||||| |||| ||||||||||||||||||||    
T  34279565 atgctcaaatgtcgagcatttatagtgcattatatgacccttcacatgagagaaaacac 34279507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 287
Target Start/End: Original strand, 18670985 - 18671048
Alignment:
Q  224 cccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttga 287  Q
    |||||||| |||| ||||||||| |||||| |||| |||||||||||||||| ||||| |||||    
T  18670985 cccaaatgccaagcatttatagtccattatatgacccttcacatgagagaaagcacccatttga 18671048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 276
Target Start/End: Original strand, 22118857 - 22118912
Alignment:
Q  221 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaa 276  Q
    |||||||||||||||| |||||||||  ||||| |||| |||||||||||||||||    
T  22118857 atgcccaaatgtcaagcatttatagtatattatatgacccttcacatgagagaaaa 22118912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 287
Target Start/End: Complemental strand, 14643797 - 14643731
Alignment:
Q  221 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttga 287  Q
    |||| ||||| ||||  |||||||| ||||||| |||| |||||||||| ||||||||||| |||||    
T  14643797 atgcacaaatatcaaacatttatagcgcattatatgacccttcacatgatagaaaacacccatttga 14643731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 228 - 287
Target Start/End: Original strand, 144229 - 144288
Alignment:
Q  228 aatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttga 287  Q
    |||| ||||||||||||||||||||| |||| |||||||||||||||||||||| |||||    
T  144229 aatgccaagtatttatagtgcattatatgacccttcacatgagagaaaacacccctttga 144288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 287
Target Start/End: Original strand, 173495 - 173561
Alignment:
Q  221 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttga 287  Q
    |||| ||||| ||||  |||||||| ||||||| |||| |||||||||| ||||||||||| |||||    
T  173495 atgcacaaatatcaaacatttatagcgcattatatgacccttcacatgatagaaaacacccatttga 173561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University