View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16686_high_1 (Length: 527)

Name: NF16686_high_1
Description: NF16686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16686_high_1
NF16686_high_1
[»] chr4 (3 HSPs)
chr4 (68-507)||(38211841-38212274)
chr4 (16-68)||(38212307-38212359)
chr4 (21-68)||(22156966-22157013)
[»] chr7 (2 HSPs)
chr7 (21-68)||(40431850-40431897)
chr7 (30-66)||(29041989-29042025)
[»] chr5 (2 HSPs)
chr5 (28-68)||(26684066-26684106)
chr5 (28-68)||(26953794-26953834)
[»] chr8 (1 HSPs)
chr8 (35-68)||(27839495-27839528)
[»] chr6 (1 HSPs)
chr6 (276-308)||(13342461-13342493)


Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 68 - 507
Target Start/End: Complemental strand, 38212274 - 38211841
Alignment:
Q  68 tcacaaaggttccgcccttgcttggggatgatcggtcaacgtgagccatgtgtttttgggcttttctctgg-gctctttatacgcatgtcaagggttcat 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38212274 tcacaaaggttccgcccttgcttggggatgatcggtcaacgtgagccatgtgtttttgggcttttctctggtgctctttatacgcatgtcaagggttcat 38212175  T
Q  167 gggccaaatggaccttttggggccgctaggtattacgtaggcctttgataacctgatattatttgtgcatgttcgaaggcaaggagcaacgcaattgaaa 266  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||     ||||| ||||||||||    
T  38212174 gggccaaatggaccttttgaggccgctaggtattacgtaggcctttgataacc--atattagttgtgcatgttcgaagg-----agcaatgcaattgaaa 38212082  T
Q  267 aattacttcaaccaccgtaattttgtgaagcgacaaagtgtaacatttgttgaagttatgataacttactatgattttatccaactcatggttcactcaa 366  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||| |||| |||||||||||    
T  38212081 aattacttcaaccaccgtaattttgtgaagctacaaagtgtaacatttgttaaaattatgataacttactatgattttatccatctcacggttcactcaa 38211982  T
Q  367 atataaatatggacgaagacggtcttcttcaaccagggatacgtgacatgatgatagtcaagataccccttgtcagtctggttagatgcttgtcattttc 466  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  38211981 atataaatatggacgaagacggtctttttcaaccagggatacgtgacatgatgatagtcaaaataccccttgtcagtctggttagatgctagtcattttc 38211882  T
Q  467 aggcttgttctccaaatattgtttgattttgttgtgagttg 507  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  38211881 aggcttgttctccaaatattgtttgattttgttgtgagttg 38211841  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 38212359 - 38212307
Alignment:
Q  16 tattctattggagtagcttaaaataaaatgtactcaaatcattcaagataaat 68  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38212359 tattttattggagtagcttaaaataaaatgtactcaaatcattcaagataaat 38212307  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 22156966 - 22157013
Alignment:
Q  21 tattggagtagcttaaaataaaatgtactcaaatcattcaagataaat 68  Q
    |||||| ||| |||||||||||||||| | ||||||||||||||||||    
T  22156966 tattggggtatcttaaaataaaatgtattaaaatcattcaagataaat 22157013  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 40431850 - 40431897
Alignment:
Q  21 tattggagtagcttaaaataaaatgtactcaaatcattcaagataaat 68  Q
    ||||| ||||||||||||||||||| |||||||||||| |||||||||    
T  40431850 tattgaagtagcttaaaataaaatgcactcaaatcatttaagataaat 40431897  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 29041989 - 29042025
Alignment:
Q  30 agcttaaaataaaatgtactcaaatcattcaagataa 66  Q
    ||||||||||||||  |||||||||||||||||||||    
T  29041989 agcttaaaataaaacttactcaaatcattcaagataa 29042025  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 26684066 - 26684106
Alignment:
Q  28 gtagcttaaaataaaatgtactcaaatcattcaagataaat 68  Q
    ||||||||||||||||||||||||||||||| || ||||||    
T  26684066 gtagcttaaaataaaatgtactcaaatcatttaatataaat 26684106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 26953794 - 26953834
Alignment:
Q  28 gtagcttaaaataaaatgtactcaaatcattcaagataaat 68  Q
    ||||||||||||||||||||||||||||||| || ||||||    
T  26953794 gtagcttaaaataaaatgtactcaaatcatttaatataaat 26953834  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 27839528 - 27839495
Alignment:
Q  35 aaaataaaatgtactcaaatcattcaagataaat 68  Q
    ||||||||||||||| ||||||||||||||||||    
T  27839528 aaaataaaatgtacttaaatcattcaagataaat 27839495  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 308
Target Start/End: Original strand, 13342461 - 13342493
Alignment:
Q  276 aaccaccgtaattttgtgaagcgacaaagtgta 308  Q
    |||||||||||||||||||||| ||||||||||    
T  13342461 aaccaccgtaattttgtgaagctacaaagtgta 13342493  T

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