View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16686_high_10 (Length: 285)
Name: NF16686_high_10
Description: NF16686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16686_high_10 |
 | |
|
| [»] scaffold0692 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 17923405 - 17923654
Alignment:
| Q |
19 |
aatgaaggattaactgctcacattctcgatgaaggtaatgcaatgcagaagcaacatcgatgataatgtttaatctatgaccaaggttcaatgttgttgg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
17923405 |
aatgaaggattaactgctcacattctcgatgaaggtaatgcaatgcagaagcaacatcgatgatgatgtttaatctatgaccaaggttcaatgttgttgg |
17923504 |
T |
|
| Q |
119 |
aggatttgcattcaaagtctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaattt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17923505 |
aggatttgcattcaaagtctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaattt |
17923604 |
T |
|
| Q |
219 |
gtgctagaacaacatgttaagaccctaaccaaatttcggtgtctaatatt |
268 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
17923605 |
gtgctagaacaacatgttaaaaccttaaccaaatttcggtgtctaatatt |
17923654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 12932486 - 12932237
Alignment:
| Q |
19 |
aatgaaggattaactgctcacattctcgatgaaggtaatgcaatgcagaagcaacatcgatgataatgtttaatctatgaccaaggttcaatgttgttgg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
12932486 |
aatgaaggattaactgctcacattctcgatgaaggtaatgcaatgcagaagcaacatcgatgatgatgtttaatctatgaccaaggttcaatgttgttgg |
12932387 |
T |
|
| Q |
119 |
aggatttgcattcaaagtctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaattt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12932386 |
aggatttgcattcaaagtctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagtgctttaaattcttgacctttgtaattt |
12932287 |
T |
|
| Q |
219 |
gtgctagaacaacatgttaagaccctaaccaaatttcggtgtctaatatt |
268 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
12932286 |
gtgctagaacaacatgttaaaaccttaaccaaatttcggtgtctaatatt |
12932237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 12907397 - 12907148
Alignment:
| Q |
19 |
aatgaaggattaactgctcacattctcgatgaaggtaatgcaatgcagaagcaacatcgatgataatgtttaatctatgaccaaggttcaatgttgttgg |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
12907397 |
aatggaggattaactgctcacattctcgatgaagataatgtaatgcagaagcaacatcgatgatgatgtttaatctaagaccaaggttcaatgttgttgg |
12907298 |
T |
|
| Q |
119 |
aggatttgcattcaaagtctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaattt |
218 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12907297 |
aggatttgcattcaaagtttcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaattt |
12907198 |
T |
|
| Q |
219 |
gtgctagaacaacatgttaagaccctaaccaaatttcggtgtctaatatt |
268 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||| |||||||||||| |
|
|
| T |
12907197 |
gtgctagaacaacatgttaaaaccttaaccaaatttctgtgtctaatatt |
12907148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 21 - 268
Target Start/End: Complemental strand, 12958283 - 12958036
Alignment:
| Q |
21 |
tgaaggattaactgctcacattctcgatgaaggtaatgcaatgcagaagcaacatcgatgataatgtttaatctatgaccaaggttcaatgttgttggag |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12958283 |
tgaaggattaactgctcacattctcgatgaagataatgtaatgcagaagcaacatcgatgatgatgtttaatctatgaccaaggttcaatgttgttggag |
12958184 |
T |
|
| Q |
121 |
gatttgcattcaaagtctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaatttgt |
220 |
Q |
| |
|
|| | ||||||||| | | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12958183 |
gactcgcattcaaaatttgaggatgtaaccactgttctaagcttccattttccatgtattcaaaaactagagctttaaattcttgacctttgtaatttgt |
12958084 |
T |
|
| Q |
221 |
gctagaacaacatgttaagaccctaaccaaatttcggtgtctaatatt |
268 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12958083 |
gctagaacaacatgttaaaaccctaaccaaatttcggtgtctaatatt |
12958036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 12899777 - 12899535
Alignment:
| Q |
19 |
aatgaaggattaactgctcacattctcgatgaaggtaatgcaatgcagaagcaacatcgatgataatgtttaatctatgaccaaggttcaatgttgttgg |
118 |
Q |
| |
|
|||||| || ||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
12899777 |
aatgaaagactaattgctcacattctcgatgaagataatgtaatgcagaagcaacatcgatgatgatgtttaatctatgaccaaggttcaatgttgttgg |
12899678 |
T |
|
| Q |
119 |
aggatttgcattcaaagtctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaattt |
218 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12899677 |
aggatttgcattcaaagtctcgggatgtaaccattgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaattt |
12899578 |
T |
|
| Q |
219 |
gtgctagaacaacatgttaagaccctaaccaaatttcggtgtc |
261 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
12899577 |
gtgctagaacaacatgttaaaaccttaaccaaatttcggtgtc |
12899535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 12948851 - 12948602
Alignment:
| Q |
19 |
aatgaaggattaactgctcacattctcgatgaaggtaatgcaatgcagaagcaacatcgatgataatgtttaatctatgaccaaggttcaatgttgttgg |
118 |
Q |
| |
|
||||||||| ||| |||||||||| ||||||||| ||||| |||||||||||||||||||| || |||||||||||| ||| |||||||||||||||||| |
|
|
| T |
12948851 |
aatgaaggactaattgctcacattatcgatgaagataatgtaatgcagaagcaacatcgataatgatgtttaatctacgacgaaggttcaatgttgttgg |
12948752 |
T |
|
| Q |
119 |
aggatttgcattcaaagtctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaattt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
12948751 |
aggatttgcattcaaagtctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttggcctttgttattt |
12948652 |
T |
|
| Q |
219 |
gtgctagaacaacatgttaagaccctaaccaaatttcggtgtctaatatt |
268 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
12948651 |
gtgctagaacaacatgttaaaaccttaaccaaatttcggtgtctaatatt |
12948602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0692 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0692
Description:
Target: scaffold0692; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 7500 - 7264
Alignment:
| Q |
19 |
aatgaaggattaactgctcacattctcgatgaaggtaatgcaatgcagaagcaacatcgatgataatgtttaatctatgaccaaggttcaatgttgttgg |
118 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
7500 |
aatgaagtattaattgctcacattctcgatgaagttaatgtaatgcagaagcaacatcgatgatgatgtttaatctatgaccaaggttcaatgttattgg |
7401 |
T |
|
| Q |
119 |
aggatttgcattcaaagtctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaattt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7400 |
aggatttgcattcaaagtctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaattt |
7301 |
T |
|
| Q |
219 |
gtgctagaacaacatgttaagaccctaaccaaatttc |
255 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7300 |
gtgctagaacaacatgttaaaaccctaaccaaatttc |
7264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 21)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 33 - 268
Target Start/End: Complemental strand, 10581196 - 10580962
Alignment:
| Q |
33 |
tgctcacattctcgatgaaggtaatgcaatgcagaagcaacatcgatgataatgtttaatctatgaccaaggttcaatgttgttggaggatttgcattca |
132 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||| || || ||||||||||||||||||||||||||||||||| |||| | |||| | | |
|
|
| T |
10581196 |
tgctcacattctcgatgaagataatgtaatgcagaagcaacatccataatgatgtttaatctatgaccaaggttcaatgttgttagaggttctgcactta |
10581097 |
T |
|
| Q |
133 |
aagtctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaatttgtgctagaacaaca |
232 |
Q |
| |
|
|| ||| |||||| ||||| |||||||||||||||||||||||||| | |||||||| ||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
10581096 |
aa-tctgaggatgcaaccattgttctaagcttccatttttcatgtaataaaaaactaaagctttaaattcttggcctttgtaatttgtactagaacaaca |
10580998 |
T |
|
| Q |
233 |
tgttaagaccctaaccaaatttcggtgtctaatatt |
268 |
Q |
| |
|
||||| ||| | || |||||| ||||||||||||| |
|
|
| T |
10580997 |
tgttagaaccttgactaaattttggtgtctaatatt |
10580962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 36 - 268
Target Start/End: Complemental strand, 10565217 - 10564985
Alignment:
| Q |
36 |
tcacattctcgatgaaggtaatgcaatgcagaagcaacatcgatgataatgtttaatctatgaccaaggttcaatgttgttggaggatttgcattcaaag |
135 |
Q |
| |
|
|||||||||| |||||| ||||| |||||||||||||||||||| ||||||| |||||||||| ||| || |||||||||||| || | |||||| ||| |
|
|
| T |
10565217 |
tcacattctctatgaagataatgtaatgcagaagcaacatcgataataatgtataatctatgagcaaagtccaatgttgttgggggttctgcatttaaaa |
10565118 |
T |
|
| Q |
136 |
tctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaatttgtgctagaacaacatgt |
235 |
Q |
| |
|
|||||||||| ||||| || ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||| || |||||||| || |
|
|
| T |
10565117 |
tctcaggatgcaaccattgatctaagcttccatttttcatgtactcaaaaaccagagctttaaattcttgacctttgtaatctgtacttgaacaacaggt |
10565018 |
T |
|
| Q |
236 |
taagaccctaaccaaatttcggtgtctaatatt |
268 |
Q |
| |
|
||| ||| |||| ||||||||||||| |||||| |
|
|
| T |
10565017 |
taaaaccttaactaaatttcggtgtcgaatatt |
10564985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 10604959 - 10604740
Alignment:
| Q |
19 |
aatgaaggattaactgctcacattctcgatgaaggtaatgcaatgcagaagcaacatcgatgataatgtttaatctatgaccaaggttcaatgttgttgg |
118 |
Q |
| |
|
|||||| || ||| |||||||||||| ||||||| ||||||||||||||||||||||| | || ||||| ||||| | |||||||| ||| |||||||| |
|
|
| T |
10604959 |
aatgaatgactaattgctcacattcttgatgaagataatgcaatgcagaagcaacatcaaaaatgatgttaaatcttttaccaaggtccaacgttgttgg |
10604860 |
T |
|
| Q |
119 |
aggatttgcattcaaagtctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaattt |
218 |
Q |
| |
|
||| | |||||| ||| |||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
10604859 |
aggctctgcatttaaaatctcaggatgcaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaattcttgacctttgtaatct |
10604760 |
T |
|
| Q |
219 |
gtgctagaacaacatgttaa |
238 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
10604759 |
gtactagaacaacatgttaa |
10604740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 33 - 265
Target Start/End: Original strand, 10216765 - 10216997
Alignment:
| Q |
33 |
tgctcacattctcgatgaaggtaatgcaatgcagaagcaacatcgatgataatgtttaatctatgaccaaggttcaatgttgttggaggatttgcattca |
132 |
Q |
| |
|
|||||||||||| |||| || ||||| ||||| |||||||||||||| || |||||||| ||||||||||||| ||||||| ||||| | | || ||| | |
|
|
| T |
10216765 |
tgctcacattcttgatgcagataatgtaatgccgaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaattta |
10216864 |
T |
|
| Q |
133 |
aagtctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaatttgtgctagaacaaca |
232 |
Q |
| |
|
|| |||||||||| ||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
10216865 |
aaatctcaggatgcaaccattgttctaagcttccatttttcatgtaataaaaaactagagctttaaattcttgacctttgtagtttgtactagaacaaca |
10216964 |
T |
|
| Q |
233 |
tgttaagaccctaaccaaatttcggtgtctaat |
265 |
Q |
| |
|
|||||| ||| |||| | |||||||||||||| |
|
|
| T |
10216965 |
tgttaaaaccttaactgagtttcggtgtctaat |
10216997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 33 - 265
Target Start/End: Original strand, 11048673 - 11048905
Alignment:
| Q |
33 |
tgctcacattctcgatgaaggtaatgcaatgcagaagcaacatcgatgataatgtttaatctatgaccaaggttcaatgttgttggaggatttgcattca |
132 |
Q |
| |
|
|||||||||||| |||| || ||||| |||||||||||||||||||| || |||||||| |||| |||||||| ||||||| ||||| | | || ||| | |
|
|
| T |
11048673 |
tgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatcaccaaggtccaatgtttttggatgctctgaattta |
11048772 |
T |
|
| Q |
133 |
aagtctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaatttgtgctagaacaaca |
232 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||| ||||||||||| |
|
|
| T |
11048773 |
aaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagtgctttaaattcttcacctttgtaatctgtactagaacaaca |
11048872 |
T |
|
| Q |
233 |
tgttaagaccctaaccaaatttcggtgtctaat |
265 |
Q |
| |
|
||||| ||| |||| || |||||||||||||| |
|
|
| T |
11048873 |
ggttaaaaccttaactaagtttcggtgtctaat |
11048905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 10716942 - 10717191
Alignment:
| Q |
19 |
aatgaaggattaactgctcacattctcgatgaaggtaatgcaatgcagaagcaacatcgatgataatgtttaatctatgaccaaggttcaatgttgttgg |
118 |
Q |
| |
|
|||||| |||||| || ||||||||| | ||||| ||||| ||||||| || |||||||| || |||||||||||||||||||||| ||||||| |||| |
|
|
| T |
10716942 |
aatgaatgattaattgttcacattcttggtgaagataatgtaatgcagtggcgacatcgatcatgatgtttaatctatgaccaaggtccaatgttcttgg |
10717041 |
T |
|
| Q |
119 |
aggatttgcattcaaagtctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaattt |
218 |
Q |
| |
|
| ||| |||||| ||| ||||| |||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| | |
|
|
| T |
10717042 |
atgatctgcatttaaaatctcaagatgcaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaaagtttgacctttgtaatct |
10717141 |
T |
|
| Q |
219 |
gtgctagaacaacatgttaagaccctaaccaaatttcggtgtctaatatt |
268 |
Q |
| |
|
|| ||||||||||||||||| | | | || | |||||||||||| ||||| |
|
|
| T |
10717142 |
gtactagaacaacatgttaatatcttcactagatttcggtgtctgatatt |
10717191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 10740701 - 10740950
Alignment:
| Q |
19 |
aatgaaggattaactgctcacattctcgatgaaggtaatgcaatgcagaagcaacatcgatgataatgtttaatctatgaccaaggttcaatgttgttgg |
118 |
Q |
| |
|
||||||||| || || ||||||||| | ||||| ||||| ||||||| || |||||| | || |||||||||||||||||||||| ||||||| |||| |
|
|
| T |
10740701 |
aatgaaggaccaattgttcacattcttggtgaagataatgtaatgcagtggcgacatcgttcatgatgtttaatctatgaccaaggtccaatgttcttgg |
10740800 |
T |
|
| Q |
119 |
aggatttgcattcaaagtctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaattt |
218 |
Q |
| |
|
| ||| |||||| ||| ||||| |||| ||||| |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| | |
|
|
| T |
10740801 |
atgatctgcatttaaaatctcaagatgcaaccattgttctaagcttccatttttcatgtaatcaaaaacaagagctttaaaagtttgacctttgtaatct |
10740900 |
T |
|
| Q |
219 |
gtgctagaacaacatgttaagaccctaaccaaatttcggtgtctaatatt |
268 |
Q |
| |
|
|| |||||||||||||| || | | |||| |||||||||||||||||||| |
|
|
| T |
10740901 |
gtactagaacaacatgtcaaaatcttaactaaatttcggtgtctaatatt |
10740950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 10611917 - 10611670
Alignment:
| Q |
19 |
aatgaaggattaactgctcacattctcgatgaaggtaatgcaatgcagaagcaacatcgatgataatgtttaatctatgaccaaggttcaatgttgttgg |
118 |
Q |
| |
|
||||||||| || ||||||||||| |||||| ||||| ||||||||| ||||||| || || |||||||||||||||| |||| |||||||| || |
|
|
| T |
10611917 |
aatgaaggaccaattgctcacattcattatgaagataatgtaatgcagaaccaacatccataatgatgtttaatctatgactgaggtccaatgttgctgt |
10611818 |
T |
|
| Q |
119 |
aggatttgcattcaaagtctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaattt |
218 |
Q |
| |
|
| | | | |||| ||| || ||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
10611817 |
atgctcttcatttaaaaccttgggatgcaaccattgttctaagcttccatttttcatgtaatcaaaaactagggctttaaattcttgacctttgtaatct |
10611718 |
T |
|
| Q |
219 |
gtgctagaacaacatgttaagaccctaaccaaatttcggtgtctaata |
266 |
Q |
| |
|
|| ||||||||||||||||| | | |||| |||||||||||||||||| |
|
|
| T |
10611717 |
gtactagaacaacatgttaaaatcttaactaaatttcggtgtctaata |
10611670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 10763135 - 10763376
Alignment:
| Q |
19 |
aatgaaggattaactgctcacattctcgatgaaggtaatgcaatgcagaagcaacatcgatgataatgtttaatctatgaccaaggttcaatgttgttgg |
118 |
Q |
| |
|
||||||||| || |||||||||||||||||||| ||||| ||||||||||||||||| || || || || | ||| ||| |||| | |||||||||||| |
|
|
| T |
10763135 |
aatgaaggaccaattgctcacattctcgatgaagataatgtaatgcagaagcaacatcaataatgatattcagtctttgatcaagatccaatgttgttgg |
10763234 |
T |
|
| Q |
119 |
aggatttgcattcaaagtctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaattt |
218 |
Q |
| |
|
|| | |||||| ||| || ||| || | ||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
10763235 |
agtctctgcatttaaattcctagggtgcagccatcgttctaagcttccatttttcatgtaatcaaaaaccagagctttaaattcttgacctttataatca |
10763334 |
T |
|
| Q |
219 |
gtgctagaacaacatgttaagaccctaaccaaatttcggtgt |
260 |
Q |
| |
|
|| ||||||||||||||||| | | |||| ||||| |||||| |
|
|
| T |
10763335 |
gtactagaacaacatgttaaaatcttaactaaattccggtgt |
10763376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 33 - 271
Target Start/End: Original strand, 10747031 - 10747269
Alignment:
| Q |
33 |
tgctcacattctcgatgaaggtaatgcaatgcagaagcaacatcgatgataatgtttaatctatgaccaaggttcaatgttgttggaggatttgcattca |
132 |
Q |
| |
|
|||||||||||| | ||||| ||||| |||| |||||||||||||| || ||||||||||| || ||||||| || ||| ||||| | | | |||| | |
|
|
| T |
10747031 |
tgctcacattcttggtgaagataatgtaatgttgaagcaacatcgataatgatgtttaatctgtggccaaggtctaacgtttttggatgctcttcattta |
10747130 |
T |
|
| Q |
133 |
aagtctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaatttgtgctagaacaaca |
232 |
Q |
| |
|
|| ||||||||| ||||| |||||||||||||||||||| ||||| | |||||||||||||||||| || ||| ||||||||| | | ||||||||||| |
|
|
| T |
10747131 |
aaaactcaggatgcaaccattgttctaagcttccattttttatgtaataaaaaactagagctttaaactcctgaactttgtaatctatactagaacaaca |
10747230 |
T |
|
| Q |
233 |
tgttaagaccctaaccaaatttcggtgtctaatattctt |
271 |
Q |
| |
|
||||| | | |||| ||||||||||||||||| ||||| |
|
|
| T |
10747231 |
cgttaaaatcttaactaaatttcggtgtctaatgttctt |
10747269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 19605867 - 19606116
Alignment:
| Q |
19 |
aatgaaggattaactgctcacattctcgatgaaggtaatgcaatgcagaagcaacatcgatgataatgtttaatctatgaccaaggttcaatgttgttgg |
118 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||||||| |||||||||| |||||||| | || |||||||| || ||| ||||||||| |||| |
|
|
| T |
19605867 |
aatgaaggaccaattgctcacattcatgatgaaggtaatgtaatgcagaagaaacatcgacaaggatatttaatctttgctcaaacttcaatgttcttgg |
19605966 |
T |
|
| Q |
119 |
aggatttgcattcaaagtctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaattt |
218 |
Q |
| |
|
| ||| |||||||| ||| | ||||| ||||| |||||||||||||||||| ||||||| ||||||||||||||||| |||||| ||||||||| || |
|
|
| T |
19605967 |
atgatctgcattcattgtcccgggatgcaaccattgttctaagcttccatttctcatgtactcaaaaactagagctttgaattctagacctttgttatca |
19606066 |
T |
|
| Q |
219 |
gtgctagaacaacatgttaagaccctaaccaaatttcggtgtctaatatt |
268 |
Q |
| |
|
| ||||||||||| ||||| | | |||| |||||||| ||||||||||| |
|
|
| T |
19606067 |
atactagaacaacaagttaaaatcttaactaaatttcgatgtctaatatt |
19606116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 10588432 - 10588684
Alignment:
| Q |
19 |
aatgaaggattaactgctcacattctcgatgaaggtaatgcaatgcagaagcaacatcgatgataatgtttaatctatgaccaaggttcaatgttgttgg |
118 |
Q |
| |
|
||||||||| | |||||||||||| ||||||| ||||| | ||||||||||| |||||| | || |||||||||||| |||||| ||| ||| |||| |
|
|
| T |
10588432 |
aatgaaggaccacctgctcacattcatgatgaagataatgtagtgcagaagcaatatcgatagtgatatttaatctatgaacaaggtccaacgttcttgg |
10588531 |
T |
|
| Q |
119 |
aggatttgcattcaaagtctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaattt |
218 |
Q |
| |
|
| | | || ||||| | || ||||| | ||| |||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
10588532 |
atgctctgaattcacattccatggatgaagccattgttctaaacttccatttttcatgtaatcaaaaactaaagctttaaattcttgacctttataatca |
10588631 |
T |
|
| Q |
219 |
gtgctagaacaacatgttaagaccctaaccaaatttcggtgtctaatattctt |
271 |
Q |
| |
|
|| | ||||||||||||||| | | | |||||||||| ||||||| |||||| |
|
|
| T |
10588632 |
gtaccagaacaacatgttaaaatcttggccaaatttcgatgtctaacattctt |
10588684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 140 - 268
Target Start/End: Complemental strand, 7193091 - 7192963
Alignment:
| Q |
140 |
aggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaatttgtgctagaacaacatgttaag |
239 |
Q |
| |
|
|||||||| ||| |||||||||||||| || |||||||||||||| |||| |||||||||||||||||||||||||| ||| || ||||||||||| || |
|
|
| T |
7193091 |
aggatgtagccattgttctaagcttccgttgttcatgtattcaaagactaaagctttaaattcttgacctttgtaatctgtactggaacaacatgtcaaa |
7192992 |
T |
|
| Q |
240 |
accctaaccaaatttcggtgtctaatatt |
268 |
Q |
| |
|
| | ||||||||||||| ||||||||||| |
|
|
| T |
7192991 |
atcttaaccaaatttcgatgtctaatatt |
7192963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 10559109 - 10558860
Alignment:
| Q |
19 |
aatgaaggattaactgctcacattctcgatgaaggtaatgcaatgcagaagcaacatcgatgataatgtttaatctatgaccaaggttcaatgttgttgg |
118 |
Q |
| |
|
||||||||| || |||||||||||||||||||| ||||| ||||||||||||||||| || || || || | ||| ||| ||| | ||||| | |||| |
|
|
| T |
10559109 |
aatgaaggaccaattgctcacattctcgatgaagataatgtaatgcagaagcaacatcaataatgatattcagtctttgattaagatccaatgctcttgg |
10559010 |
T |
|
| Q |
119 |
aggatttgcattcaaagtctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaattt |
218 |
Q |
| |
|
| | | |||||| || | ||| ||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
10559009 |
ttgctctacattcatcatccttgaatgcaaccagttttctaagcttccatttttcatgtattcaaaaactagagctttgaattcctgacctttgtaatca |
10558910 |
T |
|
| Q |
219 |
gtgctagaacaacatgttaagaccctaaccaaatttcggtgtctaatatt |
268 |
Q |
| |
|
| ||||||||||| ||||| | | |||||| |||||| ||||||||||| |
|
|
| T |
10558909 |
atactagaacaacaagttaaaatcttaaccagatttcgatgtctaatatt |
10558860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 153 - 268
Target Start/End: Original strand, 9836464 - 9836579
Alignment:
| Q |
153 |
tgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaatttgtgctagaacaacatgttaagaccctaaccaaat |
252 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||| |||| | |||||||||||||||| ||| | ||||||| |
|
|
| T |
9836464 |
tgttctaagcttccatttttcatgtaatcaaaaactaaagctttaaattctccacctttataatcaatactagaacaacatgttataaccttgaccaaat |
9836563 |
T |
|
| Q |
253 |
ttcggtgtctaatatt |
268 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
9836564 |
ttcgatgtctaatatt |
9836579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 147 - 268
Target Start/End: Complemental strand, 9825180 - 9825058
Alignment:
| Q |
147 |
aaccactgttctaagcttcc-atttttcatgtattcaaaaactagagctttaaattcttgacctttgtaatttgtgctagaacaacatgttaagacccta |
245 |
Q |
| |
|
||||| |||||||||||||| ||||| |||||| ||||||||||||||||| |||||||| |||||||||| | |||||| |||||||||| | | || |
|
|
| T |
9825180 |
aaccattgttctaagcttcccattttgcatgtactcaaaaactagagctttgaattcttgccctttgtaatcgatactagaaaaacatgttaaaatctta |
9825081 |
T |
|
| Q |
246 |
accaaatttcggtgtctaatatt |
268 |
Q |
| |
|
||||||||||| ||||||||||| |
|
|
| T |
9825080 |
accaaatttcgatgtctaatatt |
9825058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 141 - 255
Target Start/End: Original strand, 10660209 - 10660323
Alignment:
| Q |
141 |
ggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaatttgtgctagaacaacatgttaaga |
240 |
Q |
| |
|
||||||| ||| ||||||| ||||||||| |||||||||||||| |||| ||| ||||| |||||||||||||||| ||| || ||||||||||| || | |
|
|
| T |
10660209 |
ggatgtagccattgttctaggcttccattgttcatgtattcaaacactaaagccttaaactcttgacctttgtaatctgtacttgaacaacatgtcaaaa |
10660308 |
T |
|
| Q |
241 |
ccctaaccaaatttc |
255 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
10660309 |
ccttgaccaaatttc |
10660323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 141 - 255
Target Start/End: Original strand, 10652326 - 10652440
Alignment:
| Q |
141 |
ggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaatttgtgctagaacaacatgttaaga |
240 |
Q |
| |
|
||||||| ||| ||||||| | |||| || |||||||||||||| |||| ||| ||||| |||||||||||||||| || || ||||||||||| || | |
|
|
| T |
10652326 |
ggatgtagccattgttctaggtttccgttgttcatgtattcaaacactaaagccttaaactcttgacctttgtaatcggtactcgaacaacatgtcaaaa |
10652425 |
T |
|
| Q |
241 |
ccctaaccaaatttc |
255 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
10652426 |
ccttaaccaaatttc |
10652440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 268
Target Start/End: Original strand, 9850836 - 9850952
Alignment:
| Q |
153 |
tgttctaagcttccatttttcatgtattcaaaaactagagc-tttaaattcttgacctttgtaatttgtgctagaacaacatgttaagaccctaaccaaa |
251 |
Q |
| |
|
|||||||||||||||||| ||||||| | |||||||||||| ||| ||||| || |||||||||| | ||||||||| | ||||| | | |||||||| |
|
|
| T |
9850836 |
tgttctaagcttccatttatcatgtactaaaaaactagagcttttgaattcatgccctttgtaatcgatactagaacaagaagttaaaatcttaaccaaa |
9850935 |
T |
|
| Q |
252 |
tttcggtgtctaatatt |
268 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
9850936 |
tttcgatgtctaatatt |
9850952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 232
Target Start/End: Complemental strand, 10550869 - 10550778
Alignment:
| Q |
141 |
ggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaatttgtgctagaacaaca |
232 |
Q |
| |
|
||||| ||||| | ||||||| |||||||| ||||||| ||||| || ||||||||||| || |||||||||| |||||| |||||||| |
|
|
| T |
10550869 |
ggatgcaaccaattttctaagtttccatttctcatgtactcaaatacaagagctttaaactcacttcctttgtaatctgtgctggaacaaca |
10550778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 9836344 - 9836424
Alignment:
| Q |
33 |
tgctcacattctcgatgaaggtaatgcaatgcagaagcaacatcgatgataatgtttaatctatgaccaaggttcaatgtt |
113 |
Q |
| |
|
||||||||||| | |||||| ||||| ||||||||||||| ||| ||| || |||| ||| ||| |||||||||||||| |
|
|
| T |
9836344 |
tgctcacattcacaatgaagataatgtaatgcagaagcaatatcaatggagatatttagtctttgaacaaggttcaatgtt |
9836424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 155 - 268
Target Start/End: Original strand, 31467300 - 31467413
Alignment:
| Q |
155 |
ttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaatttgtgctagaacaacatgttaagaccctaaccaaattt |
254 |
Q |
| |
|
|||||||||||| ||||||||||| || ||||| |||||||||||||||||| ||||| ||| ||| || ||||| | |||||| | | ||||||||||| |
|
|
| T |
31467300 |
ttctaagcttccgtttttcatgtactcgaaaacaagagctttaaattcttgatctttgaaatctgtactggaacagcttgttaaaatcttaaccaaattt |
31467399 |
T |
|
| Q |
255 |
cggtgtctaatatt |
268 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
31467400 |
cggtgtctaatatt |
31467413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 39898834 - 39898877
Alignment:
| Q |
156 |
tctaagcttccatttttcatgtattcaaaaactagagctttaaa |
199 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
39898834 |
tctaagcttccatttgtcatgtattcaaaaactattgctttaaa |
39898877 |
T |
|
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