View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16686_high_2 (Length: 505)
Name: NF16686_high_2
Description: NF16686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16686_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 21 - 249
Target Start/End: Complemental strand, 48685651 - 48685419
Alignment:
| Q |
21 |
acggtcaactttagagctttcttgaggagttttattcaacaacatgttaaggatgcaacaagaacgacacggttgtgaggtttaggagggcggcgttggt |
120 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
48685651 |
acggtcaactttagagctctcttgaggagttttattcaacaaaatgttaaggatgcaacaagaacgacacggttgtgagatttaggagggcggcattggt |
48685552 |
T |
|
| Q |
121 |
ggtgaagttgatattgctggtgggtgaatgggaacatggaggagagacaagggtgatgcaatattgtaaaaataatatag----tgtggagagaatatga |
216 |
Q |
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|||||||||||| ||| || |||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||| | || ||||||||||| |
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| T |
48685551 |
ggtgaagttgatgttgttgtagggtgagtgggaacatggaggagagacaagggtggtgtaatattgtaaaaataatatagtatatatgtagagaatatga |
48685452 |
T |
|
| Q |
217 |
taagaatatagttttcaattgatataatggttc |
249 |
Q |
| |
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|||||||||||| |||| ||||||||||||||| |
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|
| T |
48685451 |
taagaatatagtcttcatttgatataatggttc |
48685419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 21 - 249
Target Start/End: Complemental strand, 50267845 - 50267617
Alignment:
| Q |
21 |
acggtcaactttagagctttcttgaggagttttattcaacaacatgttaaggatgcaacaagaacgacacggttgtgaggtttaggagggcggcgttggt |
120 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| || |||||||| ||||||||| ||||| | |||||||| ||||||||||||| || |
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| T |
50267845 |
acggtcaactttagagctcccttgaggagttttattcaacaaaattttaaggattcaacaagaaggacacatatttgaggtttgggagggcggcgttagt |
50267746 |
T |
|
| Q |
121 |
ggtgaagttgatattgctggtgggtgaatgggaacatggaggagagacaagggtgatgcaatattgtaaaaataatatagtgtggagagaatatgataag |
220 |
Q |
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| T |
50267745 |
ggtgaagttgatgttgctggtgggtgagtggggacatggaggagagacaagggtggtgtaataatgtaaaaataatatagtgtggagagaatatgataag |
50267646 |
T |
|
| Q |
221 |
aatatagttttcaattgatataatggttc |
249 |
Q |
| |
|
|||||||| |||| ||||| ||||||||| |
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| T |
50267645 |
aatatagtcttcatttgatctaatggttc |
50267617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 37688650 - 37688604
Alignment:
| Q |
23 |
ggtcaactttagagctttcttgaggagttttattcaacaacatgtta |
69 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
37688650 |
ggtcaactttagagctctcttgaggagttttattcaacaaaatgtta |
37688604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 193966 - 193929
Alignment:
| Q |
188 |
aaaaataatatagtgtggagagaatatgataagaatat |
225 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||| |
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|
| T |
193966 |
aaaaataatctagtgtggagagagtatgataagaatat |
193929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 32870977 - 32871103
Alignment:
| Q |
92 |
gttgtgaggtttaggagggcggcgttggtggtgaagttgatattgctggtgggtgaatgggaacatggaggagagacaagggtgatgcaatattgtaaaa |
191 |
Q |
| |
|
|||||||||||| ||||||||| | ||||||||||||| || ||||||| |||||| || | ||||||| ||||||||||||||||| |||| ||| ||| |
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|
| T |
32870977 |
gttgtgaggtttgggagggcggtgctggtggtgaagttcatgttgctggcgggtgagtgaggacatggaagagagacaagggtgatggaatagtgt-aaa |
32871075 |
T |
|
| Q |
192 |
ataatatagtgtggagagaatatgataa |
219 |
Q |
| |
|
|||||||||| | |||||| |||||||| |
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|
| T |
32871076 |
ataatatagtattgagagactatgataa |
32871103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 92 - 219
Target Start/End: Complemental strand, 7987619 - 7987493
Alignment:
| Q |
92 |
gttgtgaggtttaggagggcggcgttggtggtgaagttgatattgctggtgggtgaatgggaacatggaggagagacaagggtgatgcaatattgtaaaa |
191 |
Q |
| |
|
|||||||||||| ||||||||| | || |||||||||| || ||||||| |||||| || | ||||||| ||||||||||||||||| |||| ||||||| |
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|
| T |
7987619 |
gttgtgaggtttgggagggcggtgctgatggtgaagttcatgttgctggcgggtgagtgaggacatggaagagagacaagggtgatggaatagtgtaaaa |
7987520 |
T |
|
| Q |
192 |
ataatatagtgtggagagaatatgataa |
219 |
Q |
| |
|
|||||||||| | |||||| |||||||| |
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|
| T |
7987519 |
ataatatagtat-gagagactatgataa |
7987493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 177
Target Start/End: Original strand, 28886891 - 28886976
Alignment:
| Q |
92 |
gttgtgaggtttaggagggcggcgttggtggtgaagttgatattgctggtgggtgaatgggaacatggaggagagacaagggtgat |
177 |
Q |
| |
|
|||||||||||| |||||| | | |||||||||| ||||| ||||||| |||||| |||| |||||||||||||||||||||||| |
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| T |
28886891 |
gttgtgaggttttggagggtgatgctggtggtgaaattgatgttgctggcgggtgagtggggacatggaggagagacaagggtgat |
28886976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 40050261 - 40050396
Alignment:
| Q |
91 |
ggttgtgaggtttaggagggcggcgttggtggtgaagttgatattgctggtg------ggtgaatgggaacatggaggagagac-aagggtgatgcaata |
183 |
Q |
| |
|
|||| |||||| ||||||||||| | || ||||||||||||| |||| |||| ||||||| || ||||||||||||||| || |||| || |||| |
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| T |
40050261 |
ggttctgaggtataggagggcggtgctg-tggtgaagttgatgttgcaggtgatggttggtgaatagggacatggaggagagacaaatggtggtggaata |
40050359 |
T |
|
| Q |
184 |
ttgtaaaa-ataatatagtgtggagagaatatgataa |
219 |
Q |
| |
|
||||||| |||||| |||||||||||||||| |||| |
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|
| T |
40050360 |
atgtaaaatataatacagtgtggagagaatataataa |
40050396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 4479634 - 4479671
Alignment:
| Q |
188 |
aaaaataatatagtgtggagagaatatgataagaatat |
225 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||| |
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|
| T |
4479634 |
aaaaataatttagtgtggagagagtatgataagaatat |
4479671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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