View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16686_high_3 (Length: 495)
Name: NF16686_high_3
Description: NF16686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16686_high_3 |
 | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
| [»] scaffold0757 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 18 - 474
Target Start/End: Original strand, 16097305 - 16097755
Alignment:
| Q |
18 |
ttagtaacagtttgaacctctcccacgcatcatagagagattcaccgtcaccttgcataaaatttgtgagctcatgtcttttctcccaatactttgacat |
117 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16097305 |
ttagtaacagtttaaacctctcccaagcatcatagagagattcaccgtcaccttgcataaaatttgtgagctcatgtcttttctcccaatactttgacat |
16097404 |
T |
|
| Q |
118 |
aggaaaaacctcttgaagaaacttaagttataac--ctctcaagtctgtatggttacacttggcagagacaataaccattccttggctctccctattaat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16097405 |
aggaaaaacctcttgaagaaacttaagttataactcctctcaagtctgtatggttacacttggcagagacaataaccattccttggctctccctattaat |
16097504 |
T |
|
| Q |
216 |
gtaaaagcaaaccgcctaagtttcttttggtcctcagtgacattggctggtggcacatagtattggcaagtttcatagaacctacttaggtgctcatgag |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16097505 |
gtaaaagcaaaccgcctaagtttcttttggtcctcagtgacattggctggtggcacatagtattggcaagtttcataaaacctacttaggtgctcatgag |
16097604 |
T |
|
| Q |
316 |
ggcatgcattgggcatctcttcctccatattagttttatttcaaccctcattagacatatgctttgatgtcaaaaactacggggttggcatgttggaaga |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
16097605 |
ggcatgcattgggcatctcttcctccatattagttttatttcaaccctcattagacatatgctttgatgtcaaaaactacagg--------gttggaaga |
16097696 |
T |
|
| Q |
416 |
tataactaagtcgatcatggttagtagtcaacccatattcacccatcataggtctagaa |
474 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16097697 |
tataactaagtcgataatggttagtagtcaacccatattcacccatcataggtctagaa |
16097755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 19863490 - 19863528
Alignment:
| Q |
22 |
taacagtttgaacctctcccacgcatcatagagagattc |
60 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19863490 |
taacagtttgaacctctcccaagcatcatagagagattc |
19863528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 38624689 - 38624566
Alignment:
| Q |
22 |
taacagtttgaacctctcccacgcatcatagagagattcaccgtcaccttgcataaaatttgtgagctcatgtcttttctcccaatactttgacatagga |
121 |
Q |
| |
|
|||||| |||||||||||||| |||| || ||||||||| || || ||| |||| || |||| || ||||||||||||||||| |||| ||||||| |
|
|
| T |
38624689 |
taacagcttgaacctctcccaagcattatgaagagattcagactctccctgcctaaagttggtgatttcttgtcttttctcccaatattttggcatagga |
38624590 |
T |
|
| Q |
122 |
aaaacctcttgaagaaacttaagtt |
146 |
Q |
| |
|
|| | ||| || ||||||||||||| |
|
|
| T |
38624589 |
aagatctc-tggagaaacttaagtt |
38624566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 64579 - 64542
Alignment:
| Q |
22 |
taacagtttgaacctctcccacgcatcatagagagatt |
59 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
64579 |
taacagtttgaacctctcccaagcatcatagagagatt |
64542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0757 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0757
Description:
Target: scaffold0757; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 6026 - 5988
Alignment:
| Q |
22 |
taacagtttgaacctctcccacgcatcatagagagattc |
60 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
6026 |
taacagtctgaacctctcccaagcatcatagagagattc |
5988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University