View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16686_low_1 (Length: 562)
Name: NF16686_low_1
Description: NF16686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16686_low_1 |
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| [»] scaffold0283 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 521; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Original strand, 44903778 - 44904310
Alignment:
| Q |
1 |
acctttgatgtgttctctggtccctccgtaagtacgcggtgaaagacgaatgcaccagcatcttctcttggtatagcatgtgtatttgtggttgttatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44903778 |
acctttgatgtgttctctggtccctccgtaagtacgcggtgaaagacgaatgtaccagcatcttctcttggtatagcatgtgtatttgtggttgttatgt |
44903877 |
T |
|
| Q |
101 |
tttgaggttgttgaatgtaaagagatagatcaagccatggtcttgaatggatctttttatgtgaaacaggtgataccaaagattataacaattatatgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44903878 |
tttgaggttgttgaatgtaaagagatagatcaagccatggtcttgaatggatctttttatgtgaaacaggtgataccaaagattataacaattatatggt |
44903977 |
T |
|
| Q |
201 |
caaagaaatagatttaaaatccaatatcaaattgtattgagtatcgactctacatgtgaatgttcagagcttaaaaaggttacgaatgaagtgaaccttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44903978 |
caaagaaatagatttaaaatccaatatcaaattgtattgagtatcgactctacatgtgaatgttcagagcttaaaaaggttacgaatgaagtgaaccttt |
44904077 |
T |
|
| Q |
301 |
tctgcaccatctcttagcttttttgcggccattgagggcaggaacgaatatggtaacattatagcactacggttgtttcgatccttgcattccatacacc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44904078 |
tctgcaccatctcttagcttttttgcggccattgagggcaggaacgaatatggtaacattatagcactacggttgtttcgatccttgcattccatacacc |
44904177 |
T |
|
| Q |
401 |
tggaaagccatcattagcaccttgaattcagaagaatctctgcttgattattttatgagtaatcatcttcacagtagcaccacaatggcattttgtaagg |
500 |
Q |
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| T |
44904178 |
tggaaagccatcattagcaccttgaattcagaagaatctctgcttgattattttatgattaatcatcttcacagtagcaccacaatggcattttgtaagg |
44904277 |
T |
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| Q |
501 |
catgattcaaacctcaacttagttgagttataa |
533 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
44904278 |
catgattcaaacctcaacttagttgagttataa |
44904310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 187 - 533
Target Start/End: Complemental strand, 44898267 - 44897911
Alignment:
| Q |
187 |
aacaattatatgctcaaagaaatagatttaaaatccaatatcaaattgtattgagtatcgactctacatgtgaatgttcagagcttaaaaaggttacgaa |
286 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||| |||||| ||| |
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| T |
44898267 |
aacaattatatgctcgaagaaatagatttaaaatccaatatcaaattgtattga-------ctctacatgtgaatgttaagaacttaaagaggttatgaa |
44898175 |
T |
|
| Q |
287 |
tgaagtgaaccttttctgcaccatctcttagcttttttgcggccattgagggcaggaacgaatatggtaacattatagcactacggttgtttcgatcctt |
386 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44898174 |
tgaagtgaaccttttctgcagcatctcttagcttttttgcggccattgagggcaggaacgaatatggtaacattatagcactacggttgtttcgatcctt |
44898075 |
T |
|
| Q |
387 |
gcattccatacacctggaaagccatcattagcaccttg-aattcagaagaatctctgcttg----------------attattttatgagtaatcatctt |
469 |
Q |
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|||||||||| ||||||||||||||||||||||| | | |||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
44898074 |
gcattccataaacctggaaagccatcattagcacttcgaaattcagaagaatctctgcttgtagcatataacaacttattattttatgagcaatcatctt |
44897975 |
T |
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| Q |
470 |
cacagtagcaccacaatggcattttgtaaggcatgattcaaacctcaacttagttgagttataa |
533 |
Q |
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| T |
44897974 |
cacagtagcaccacaatggcattttgtaaggcatgattcaaacgtcaacttagttgagttataa |
44897911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 44917250 - 44917430
Alignment:
| Q |
1 |
acctttgatgtgttctctggtccctccgtaagtacgcggtgaaagacgaatgcaccagcatcttctcttggtatagcatgtgtatttgtggttgttatgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44917250 |
acctttgatgtgttctctggtccctccgtaagtacgcggtgaaagacaaatgcaccagcatcttctcttggtatagcatgtgtatttgaggttgttatgt |
44917349 |
T |
|
| Q |
101 |
tttgaggttgttgaatgtaaagagatagatcaagccatggtcttgaatggatctttttatgtgaaacaggtgataccaaag |
181 |
Q |
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| T |
44917350 |
tttgagattgttgaatgtaaagagatagatcaagccatggtcttgaatggatctttttatgtgaaacaggtgataccaaag |
44917430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 489 - 533
Target Start/End: Original strand, 44905747 - 44905791
Alignment:
| Q |
489 |
cattttgtaaggcatgattcaaacctcaacttagttgagttataa |
533 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44905747 |
cattttgtaaggcatgattcaaacctcaacttagttgagttataa |
44905791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 489 - 533
Target Start/End: Complemental strand, 44948262 - 44948218
Alignment:
| Q |
489 |
cattttgtaaggcatgattcaaacctcaacttagttgagttataa |
533 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44948262 |
cattttgtaaggcatgattcaaacctcaacttagttgagttataa |
44948218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0283 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0283
Description:
Target: scaffold0283; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 489 - 533
Target Start/End: Complemental strand, 4241 - 4197
Alignment:
| Q |
489 |
cattttgtaaggcatgattcaaacctcaacttagttgagttataa |
533 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4241 |
cattttgtaaggcatgattcaaacctcaacttagttgagttataa |
4197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 532 - 561
Target Start/End: Complemental strand, 17782662 - 17782633
Alignment:
| Q |
532 |
aaattataggctaaagtgcacttttccccc |
561 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
17782662 |
aaattataggctaaagtgcacttttccccc |
17782633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 529 - 561
Target Start/End: Complemental strand, 5778948 - 5778916
Alignment:
| Q |
529 |
tataaattataggctaaagtgcacttttccccc |
561 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
5778948 |
tataaattgtaggctaaagtgcacttttccccc |
5778916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 534 - 562
Target Start/End: Complemental strand, 17388317 - 17388289
Alignment:
| Q |
534 |
attataggctaaagtgcacttttcccccc |
562 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
17388317 |
attataggctaaagtgcacttttcccccc |
17388289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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