View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16686_low_14 (Length: 240)

Name: NF16686_low_14
Description: NF16686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16686_low_14
NF16686_low_14
[»] chr4 (6 HSPs)
chr4 (1-223)||(52993462-52993694)
chr4 (178-223)||(29296105-29296150)
chr4 (179-223)||(29295971-29296015)
chr4 (84-152)||(11429316-11429384)
chr4 (177-217)||(12223636-12223676)
chr4 (84-152)||(29296005-29296073)
[»] chr6 (1 HSPs)
chr6 (179-223)||(28929560-28929604)
[»] chr3 (5 HSPs)
chr3 (179-223)||(11494306-11494350)
chr3 (179-223)||(11494450-11494494)
chr3 (180-217)||(41539173-41539210)
chr3 (179-223)||(11494591-11494635)
chr3 (84-152)||(23903221-23903289)
[»] chr5 (1 HSPs)
chr5 (179-223)||(19214286-19214330)


Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 52993462 - 52993694
Alignment:
Q  1 ccaaggaacataaaatttttattcatatcatagtgcaaaattgatttgatgtatgtaacttaccaccgacatctgaactacacaaaagcttattaaccca 100  Q
    |||||||||||||||  |||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  52993462 ccaaggaacataaaaactttattcatatcatagtgcacaattgatgcgatgtatgtaacttaccaccgacatctgaactacacaaaagcctattaaccca 52993561  T
Q  101 ttaatttatgcactgttatatgcaatgaagttccaaaactaaagaatcttta----------gatctctaaactttatttttatatgagggtaaaccaca 190  Q
    ||||||  ||||| |||||||||||||||| || ||||||||||||||||||          ||||||||||||||||||||| |||| |||||||||||    
T  52993562 ttaattcctgcacagttatatgcaatgaaggtctaaaactaaagaatctttaaattacatgggatctctaaactttatttttacatgatggtaaaccaca 52993661  T
Q  191 tttcgcctatatgacagagggtaaaagcctatt 223  Q
    ||||| ||||||||||| |||||||||||||||    
T  52993662 tttcgtctatatgacagggggtaaaagcctatt 52993694  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 29296105 - 29296150
Alignment:
Q  178 agggtaaaccacatttcgcctatatgacagagggtaaaagcctatt 223  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||    
T  29296105 agggtaaaccaaatttcgcctgtatgacagagggtaaaagcctatt 29296150  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 29295971 - 29296015
Alignment:
Q  179 gggtaaaccacatttcgcctatatgacagagggtaaaagcctatt 223  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||    
T  29295971 gggtaaaccaaatttcgcctatatgacagagggtaaaagcatatt 29296015  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 11429316 - 11429384
Alignment:
Q  84 aaaagcttattaacccattaatttatgcactgttatatgcaatgaagttccaaaactaaagaatcttta 152  Q
    |||||| ||||||||||| ||||| ||||| || ||||||| ||| | |||||||| || |||||||||    
T  11429316 aaaagcctattaacccataaatttctgcacagtcatatgcactgagggtccaaaaccaatgaatcttta 11429384  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 12223636 - 12223676
Alignment:
Q  177 gagggtaaaccacatttcgcctatatgacagagggtaaaag 217  Q
    |||||||||||| ||||| |||||||||||| |||||||||    
T  12223636 gagggtaaaccaaatttcacctatatgacagggggtaaaag 12223676  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 29296005 - 29296073
Alignment:
Q  84 aaaagcttattaacccattaatttatgcactgttatatgcaatgaagttccaaaactaaagaatcttta 152  Q
    |||||| ||||||||||| ||||||||||| || ||||||| | | | |||||||| ||||||| ||||    
T  29296005 aaaagcatattaacccatgaatttatgcacagtcatatgcattcagggtccaaaaccaaagaattttta 29296073  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 28929560 - 28929604
Alignment:
Q  179 gggtaaaccacatttcgcctatatgacagagggtaaaagcctatt 223  Q
    ||||||| || ||||||||| ||||||||||||||||||||||||    
T  28929560 gggtaaatcaaatttcgcctttatgacagagggtaaaagcctatt 28929604  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 11494350 - 11494306
Alignment:
Q  179 gggtaaaccacatttcgcctatatgacagagggtaaaagcctatt 223  Q
    |||||||||| |||||| ||||||||||| |||||||||||||||    
T  11494350 gggtaaaccatatttcgtctatatgacagggggtaaaagcctatt 11494306  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 11494450 - 11494494
Alignment:
Q  179 gggtaaaccacatttcgcctatatgacagagggtaaaagcctatt 223  Q
    |||||||||| |||||||||||||| ||| |||||||||||||||    
T  11494450 gggtaaaccaaatttcgcctatatggcagggggtaaaagcctatt 11494494  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 41539173 - 41539210
Alignment:
Q  180 ggtaaaccacatttcgcctatatgacagagggtaaaag 217  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  41539173 ggtaaaccacatttcgcctatatggcagggggtaaaag 41539210  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 11494591 - 11494635
Alignment:
Q  179 gggtaaaccacatttcgcctatatgacagagggtaaaagcctatt 223  Q
    |||||||||| ||||||| |||||| ||| |||||||||||||||    
T  11494591 gggtaaaccatatttcgcttatatggcagggggtaaaagcctatt 11494635  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 23903289 - 23903221
Alignment:
Q  84 aaaagcttattaacccattaatttatgcactgttatatgcaatgaagttccaaaactaaagaatcttta 152  Q
    |||||| ||||||||||| ||||| ||||| || ||||||| ||| | || ||||| ||||||||||||    
T  23903289 aaaagcctattaacccataaatttctgcacagtcatatgcattgaggatctaaaaccaaagaatcttta 23903221  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 19214286 - 19214330
Alignment:
Q  179 gggtaaaccacatttcgcctatatgacagagggtaaaagcctatt 223  Q
    |||||||||| || ||||||||||| ||| |||||||||||||||    
T  19214286 gggtaaaccaaatgtcgcctatatggcagggggtaaaagcctatt 19214330  T

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