View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16686_low_2 (Length: 527)
Name: NF16686_low_2
Description: NF16686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16686_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 68 - 507
Target Start/End: Complemental strand, 38212274 - 38211841
Alignment:
| Q |
68 |
tcacaaaggttccgcccttgcttggggatgatcggtcaacgtgagccatgtgtttttgggcttttctctgg-gctctttatacgcatgtcaagggttcat |
166 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38212274 |
tcacaaaggttccgcccttgcttggggatgatcggtcaacgtgagccatgtgtttttgggcttttctctggtgctctttatacgcatgtcaagggttcat |
38212175 |
T |
|
| Q |
167 |
gggccaaatggaccttttggggccgctaggtattacgtaggcctttgataacctgatattatttgtgcatgttcgaaggcaaggagcaacgcaattgaaa |
266 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||| |||||||||| |
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| T |
38212174 |
gggccaaatggaccttttgaggccgctaggtattacgtaggcctttgataacc--atattagttgtgcatgttcgaagg-----agcaatgcaattgaaa |
38212082 |
T |
|
| Q |
267 |
aattacttcaaccaccgtaattttgtgaagcgacaaagtgtaacatttgttgaagttatgataacttactatgattttatccaactcatggttcactcaa |
366 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
38212081 |
aattacttcaaccaccgtaattttgtgaagctacaaagtgtaacatttgttaaaattatgataacttactatgattttatccatctcacggttcactcaa |
38211982 |
T |
|
| Q |
367 |
atataaatatggacgaagacggtcttcttcaaccagggatacgtgacatgatgatagtcaagataccccttgtcagtctggttagatgcttgtcattttc |
466 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
38211981 |
atataaatatggacgaagacggtctttttcaaccagggatacgtgacatgatgatagtcaaaataccccttgtcagtctggttagatgctagtcattttc |
38211882 |
T |
|
| Q |
467 |
aggcttgttctccaaatattgtttgattttgttgtgagttg |
507 |
Q |
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| T |
38211881 |
aggcttgttctccaaatattgtttgattttgttgtgagttg |
38211841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 38212359 - 38212307
Alignment:
| Q |
16 |
tattctattggagtagcttaaaataaaatgtactcaaatcattcaagataaat |
68 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38212359 |
tattttattggagtagcttaaaataaaatgtactcaaatcattcaagataaat |
38212307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 22156966 - 22157013
Alignment:
| Q |
21 |
tattggagtagcttaaaataaaatgtactcaaatcattcaagataaat |
68 |
Q |
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|||||| ||| |||||||||||||||| | |||||||||||||||||| |
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| T |
22156966 |
tattggggtatcttaaaataaaatgtattaaaatcattcaagataaat |
22157013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 40431850 - 40431897
Alignment:
| Q |
21 |
tattggagtagcttaaaataaaatgtactcaaatcattcaagataaat |
68 |
Q |
| |
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||||| ||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
40431850 |
tattgaagtagcttaaaataaaatgcactcaaatcatttaagataaat |
40431897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 29041989 - 29042025
Alignment:
| Q |
30 |
agcttaaaataaaatgtactcaaatcattcaagataa |
66 |
Q |
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|||||||||||||| ||||||||||||||||||||| |
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| T |
29041989 |
agcttaaaataaaacttactcaaatcattcaagataa |
29042025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 26684066 - 26684106
Alignment:
| Q |
28 |
gtagcttaaaataaaatgtactcaaatcattcaagataaat |
68 |
Q |
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||||||||||||||||||||||||||||||| || |||||| |
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| T |
26684066 |
gtagcttaaaataaaatgtactcaaatcatttaatataaat |
26684106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 26953794 - 26953834
Alignment:
| Q |
28 |
gtagcttaaaataaaatgtactcaaatcattcaagataaat |
68 |
Q |
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||||||||||||||||||||||||||||||| || |||||| |
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| T |
26953794 |
gtagcttaaaataaaatgtactcaaatcatttaatataaat |
26953834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 27839528 - 27839495
Alignment:
| Q |
35 |
aaaataaaatgtactcaaatcattcaagataaat |
68 |
Q |
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||||||||||||||| |||||||||||||||||| |
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| T |
27839528 |
aaaataaaatgtacttaaatcattcaagataaat |
27839495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 308
Target Start/End: Original strand, 13342461 - 13342493
Alignment:
| Q |
276 |
aaccaccgtaattttgtgaagcgacaaagtgta |
308 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
13342461 |
aaccaccgtaattttgtgaagctacaaagtgta |
13342493 |
T |
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