View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16686_low_6 (Length: 476)
Name: NF16686_low_6
Description: NF16686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16686_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 20 - 464
Target Start/End: Complemental strand, 7124676 - 7124232
Alignment:
| Q |
20 |
ttgttggctaaaggatcgtttgaattggctccggaggaagtgaagctccatatcaggtccattgtactgccgcatacagagttgggcggtgatcaatgta |
119 |
Q |
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| T |
7124676 |
ttgttggctaaaggatcgtttgaattggctccggaggaagtgaagctccatatcaggtccattgtactgccgcatacagagttgggcggtgatcaatgta |
7124577 |
T |
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| Q |
120 |
aagtggtcgggaaaaggaagtggtgagtttactgtgtttctagtggatacaagctgccaagtgccgatgaaaacagtgagatgatgaatgatccgatatg |
219 |
Q |
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| T |
7124576 |
aagtggtcgggaaaaggaagtggtgagtttactgtgtttctagtggatacaagctgccaagtgccgatgaaaacaatgagatgatgaatgatccgatatg |
7124477 |
T |
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| Q |
220 |
gaggaagatttggtggctttgaagtgcatgaaagaattaggtgctttatttggttggtgtaccatggtagattattaaccaactaattgaagcatagcat |
319 |
Q |
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| T |
7124476 |
gaggaaaatttggtggcttttaagtgcatgaaagaattaggtgctttatttggttggtgtaccatggtagattattaaccaactaattgaagcatagcat |
7124377 |
T |
|
| Q |
320 |
gtggatggatgggatatccgttttgtaatatttccagtagagacaattctccatgtgttaagggattgaccattagcaatagattgatattaagctaata |
419 |
Q |
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| T |
7124376 |
gtggatggatgggatatccgttttgtaatatttccagtagagacaattctccatgtgttaagggattgaccattagcaatagattgatattaagctaatg |
7124277 |
T |
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| Q |
420 |
ttcatcaatagattgatttaataccagctgcagtgtggaagatga |
464 |
Q |
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| T |
7124276 |
ttcatcaatagattgatttaataccagctgcagtgtggaagatga |
7124232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 7127875 - 7127812
Alignment:
| Q |
20 |
ttgttggctaaaggatcgtttgaattggct-ccggaggaagtgaagctccatatcaggtccatt |
82 |
Q |
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|||||||||| |||||||||||||||| || ||||| ||||| ||||||| ||||| ||||||| |
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| T |
7127875 |
ttgttggctagaggatcgtttgaattgcctcccggaagaagttaagctccgtatcaagtccatt |
7127812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 7133141 - 7133058
Alignment:
| Q |
20 |
ttgttggctaaaggatcgtttgaattggctcc-ggaggaagtgaagctccatatcaggtccattgtactgccgcatacagagtt |
102 |
Q |
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||||| |||| |||||| |||||||||||| | ||||||||| |||||| |||||||||||| |||||||| || ||||||| |
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| T |
7133141 |
ttgttagctagaggatcatttgaattggcttctggaggaagttaagctcggcatcaggtccattctactgccgtattcagagtt |
7133058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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