View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16686_low_7 (Length: 400)
Name: NF16686_low_7
Description: NF16686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16686_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 52993243 - 52993048
Alignment:
| Q |
1 |
ttgcttctggtttgctactattgctttcatttctcaaatttgtgtaccctcccttcaaatatgttgctcttgctgctgttgttgccggcatttatccaat |
100 |
Q |
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| T |
52993243 |
ttgcttctggtttgctactattgctttcatttctcaaatttgtgtacactcccttcaaatatgttgctcttgctgctgttgttgccggcatttatccaat |
52993144 |
T |
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| Q |
101 |
cttcttgaaagctattgtttccattcggaatcttagaattgacattaacattcttgtcatcatagcaggtataatttcatttgcttaatactataa |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52993143 |
cttcttgaaagctattgtttccattcggaatcttagaattgacattaacattcttgtcatcatagcaggtataatttcatttgcttaatactataa |
52993048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 239 - 363
Target Start/End: Complemental strand, 52993010 - 52992886
Alignment:
| Q |
239 |
gttcccaaacatgtgaaagggtattatttcatactacttaagttggtttactagttgaccaattttcaaattgttaattttattgagattcaaataaaaa |
338 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52993010 |
gttcccaaacatgtgaaagggtattatttcatactacttaagttggtttactagttgaccaattttcaaattgttaattttattgagattcaaataaaag |
52992911 |
T |
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| Q |
339 |
ccgttgcttttgctcataaaactcg |
363 |
Q |
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| T |
52992910 |
ccgttgcgtttgctcataaaactcg |
52992886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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