View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16686_low_9 (Length: 333)
Name: NF16686_low_9
Description: NF16686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16686_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 38212331 - 38212645
Alignment:
| Q |
1 |
attttattttaagctactccaataaaatagtttagccacgtcaaacaaatctatttaccaaaatttattcgtattgttttgacactttcaatatcttcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38212331 |
attttattttaagctactccaataaaatattttagccacgtcaaagaaatctatttatcaaaatttatttgtattgttttgacactttcaatatcttcaa |
38212430 |
T |
|
| Q |
101 |
tagctattgagaaatataattgtatagagctnnnnnnnntatattcaactctcaagtttaatatataagtattttaaaaactctttatatttgccaccct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38212431 |
cagctattgagaaatataattgtatagagctgaaaaa--tatattcaactctcaagtttaatatataagtattttaaaaactct--atatttgccaccct |
38212526 |
T |
|
| Q |
201 |
cgtgacatttactctagcattgctgctgtccccaggcggtccgaagacatagaatcatgtttgtaatgtcctcgcccataaacaaagtacaaagatcaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38212527 |
cgtgacatttactctagcattgctgctgtccccaggcggtctgaagacatagaatcatgtttgtaatgtcctcggccataaacaaagtacaaagatcaat |
38212626 |
T |
|
| Q |
301 |
agttacaaccatctgtgct |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
38212627 |
agttacaaccatctgtgct |
38212645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 218
Target Start/End: Complemental strand, 52375253 - 52375098
Alignment:
| Q |
61 |
aaatttattcgtattgttttgacactttcaatatcttcaatagctattgagaaatataattgtatagagctnnnnnnnntatattcaactctcaagttta |
160 |
Q |
| |
|
|||||||||||| || |||| |||||||||| |||| |||| |||| ||||||||||||||||||||| | ||||||||||||| ||||||| |
|
|
| T |
52375253 |
aaatttattcgttttactttgtcactttcaatctctttaataactatagagaaatataattgtatagagattaaaaa--tatattcaactctaaagttta |
52375156 |
T |
|
| Q |
161 |
atatataagtattttaaaaactctttatatttgccaccctcgtgacatttactctagc |
218 |
Q |
| |
|
||||||| |||| ||| | |||||||||||| | ||||||||||||||||||||| |
|
|
| T |
52375155 |
ttatataaacatttaaaacaatctttatatttgacctcctcgtgacatttactctagc |
52375098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 40431766 - 40431698
Alignment:
| Q |
61 |
aaatttattcgtattgttttgacactttcaatatcttcaatagctattgagaaatataattgtatagag |
129 |
Q |
| |
|
|||| ||||||| || ||||||| ||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40431766 |
aaatgtattcgtcttattttgaccgtttcaatctcttcaatagctatagagaaatataattgtatagag |
40431698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University