View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16687_low_1 (Length: 379)
Name: NF16687_low_1
Description: NF16687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16687_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 41306034 - 41306398
Alignment:
| Q |
1 |
ttacatgaaatatcaagtgtcacgcaagaaatttgtcaattatatagctttcatacccacacacaccaaagtttatggaaaataataataatgataagaa |
100 |
Q |
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| T |
41306034 |
ttacatgaaatatcaagtgtcacgcaagaaatttgtcaattatatagctatcatacccacacacaccaaagtttatggaaaataataataatgataagaa |
41306133 |
T |
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| Q |
101 |
aaaagctggagttctggattggtatatcatattgatcaagttgatnnnnnnnnn---------cttctcaagttgaaccaaattttttgtccacgtgatt |
191 |
Q |
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| T |
41306134 |
aaaagctggagttctggattggta----atattgatcaagttgataaaaaataaaaaaaaaaacttctcaagttgaaccaaatttgt-gtccacgtgatt |
41306228 |
T |
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| Q |
192 |
attaactacgtagaaagcacttctaccacnnnnnnnnnnngacttattttcctcccaagtttctaatttgttttcgtacttgtttcaagctggacactac |
291 |
Q |
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| T |
41306229 |
attaactacgtagaaagcacttctaccactttttttttttgacttattttcctcccaagtttctaatttgttttcgtacttgtttcaagctggacactac |
41306328 |
T |
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| Q |
292 |
tatgttaattaaatacgcgtcctacataacgactataaatagagcatgtcctcaatgttcttcttcgtgg |
361 |
Q |
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| T |
41306329 |
tatgttaattaaatacgcgtcctacataacgactataaatagagcatgtcctcaatgttcttcttcgtgg |
41306398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 355
Target Start/End: Original strand, 41296552 - 41296632
Alignment:
| Q |
271 |
ttgtttcaagctggacactactatgttaattaaatacgcgtcctacataacgactataaatagagcatgtcctcaatgttcttct |
355 |
Q |
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| T |
41296552 |
ttgtttcaagctggacactaccatgttac----atacgcgtcctaagtaacaactataaatagagcatgtccttaatgctcttct |
41296632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 41296421 - 41296461
Alignment:
| Q |
155 |
cttctcaagttgaaccaaattttttgtccacgtgattatta |
195 |
Q |
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| T |
41296421 |
cttctcaagttgaaccaaatattgcgtccacgtgattatta |
41296461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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